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Segmentation fault during Connect Conforming inner and periodic sides #5

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rschoene opened this issue Aug 10, 2018 · 0 comments
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@rschoene
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rschoene commented Aug 10, 2018

When using the attached file with hopr, I get a segmentation fault during the step
Connect Conforming inner and periodic sides...

System:

  • Intel Haswell
  • BullX SCS4
  • Linux 2.6.32-696.30.1.el6.x86_64
  • intel 18.0.1 20171018
  • Intel-MPI 18.0.1 20171018
  • hopr commit 7ce0fe1

Build procedure:

FFLAGS="-I/sw/global/compilers/intel/2018/impi/2018.1.163/include64/ -O0 -g" cmake ..
make

GDB prints:

Program received signal SIGSEGV, Segmentation fault.
0x00000000004c3b98 in mod_sortingtools::domergeint (a=Cannot access memory at address 0x7ffffe9899e0
) at /lustre/ssd/rschoene/hopr/src/sortingtools.f90:951
951	part1(:,1:nA)=A(:,1:nA)
Missing separate debuginfos, use: debuginfo-install glibc-2.12-1.209.el6_9.2.x86_64 zlib-1.2.3-29.el6.x86_64
(gdb) bt
#0  0x00000000004c3b98 in mod_sortingtools::domergeint (a=Cannot access memory at address 0x7ffffe9899e0
) at /lustre/ssd/rschoene/hopr/src/sortingtools.f90:951
#1  0x00000000004c35a2 in mod_sortingtools::mergesortint (a=Cannot access memory at address 0x7ffffe9899e0
) at /lustre/ssd/rschoene/hopr/src/sortingtools.f90:927
#2  0x00000000004c3212 in mod_sortingtools::mergesortint (a=Cannot access memory at address 0x7ffffe9899e0
) at /lustre/ssd/rschoene/hopr/src/sortingtools.f90:923
#3  0x00000000004c2f05 in mod_sortingtools::msortnint (a=Cannot access memory at address 0x7ffffe9899e0
) at /lustre/ssd/rschoene/hopr/src/sortingtools.f90:881
#4  0x000000000044891c in mod_mesh_connect::connectmesh () at /lustre/ssd/rschoene/hopr/src/mesh/mesh_connect.f90:393
#5  0x000000000044348c in mod_mesh_connect::connect (reconnect=Cannot access memory at address 0x7ffffe9899e0
) at /lustre/ssd/rschoene/hopr/src/mesh/mesh_connect.f90:182
#6  0x000000000043567e in mod_mesh::fillmesh () at /lustre/ssd/rschoene/hopr/src/mesh/mesh.f90:568
#7  0x00000000004055b7 in hopr () at /lustre/ssd/rschoene/hopr/src/hopr.f90:84
#8  0x000000000040515e in main ()
#9  0x000000371121ed1d in __libc_start_main () from /lib64/libc.so.6
#10 0x0000000000405069 in _start ()

I attached the parameter_hopr_unstr_large.zip file, which I used via
hopr /lustre/ssd/rschoene/flexi/test/parameter_hopr_unstr_large.ini

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