diff --git a/DHARMa/.Rbuildignore b/DHARMa/.Rbuildignore index 32fcd5a..8db5dfd 100644 --- a/DHARMa/.Rbuildignore +++ b/DHARMa/.Rbuildignore @@ -8,4 +8,5 @@ vignettes/*.R vignettes/*.html vignettes/*.pdf vignettes/DHARMa_files -vignettes/DHARMa_cache \ No newline at end of file +vignettes/DHARMa_cache +^revdep$ diff --git a/DHARMa/revdep/.gitignore b/DHARMa/revdep/.gitignore new file mode 100644 index 0000000..111ab32 --- /dev/null +++ b/DHARMa/revdep/.gitignore @@ -0,0 +1,7 @@ +checks +library +checks.noindex +library.noindex +cloud.noindex +data.sqlite +*.html diff --git a/DHARMa/revdep/README.md b/DHARMa/revdep/README.md new file mode 100644 index 0000000..3b948a4 --- /dev/null +++ b/DHARMa/revdep/README.md @@ -0,0 +1,102 @@ +# Platform + +|field |value | +|:--------|:------------------------------------------| +|version |R version 4.4.1 (2024-06-14) | +|os |macOS Sonoma 14.6.1 | +|system |aarch64, darwin20 | +|ui |RStudio | +|language |(EN) | +|collate |pt_BR.UTF-8 | +|ctype |pt_BR.UTF-8 | +|tz |Europe/Berlin | +|date |2024-10-15 | +|rstudio |2024.09.0+375 Cranberry Hibiscus (desktop) | +|pandoc |3.2 @ /opt/homebrew/bin/pandoc | + +# Dependencies + +|package |old |new |Δ | +|:------------|:---------|:---------|:--| +|DHARMa |0.4.6 |0.4.6.1 |* | +|ape |5.8 |5.8 | | +|askpass |1.2.1 |1.2.1 | | +|base64enc |0.1-3 |0.1-3 | | +|bslib |0.8.0 |0.8.0 | | +|cachem |1.1.0 |1.1.0 | | +|colorspace |2.1-1 |2.1-1 | | +|commonmark |1.9.2 |1.9.2 | | +|cpp11 |NA |0.5.0 |* | +|crosstalk |1.2.1 |1.2.1 | | +|curl |5.2.3 |5.2.3 | | +|data.table |1.16.2 |1.16.2 | | +|digest |0.6.37 |0.6.37 | | +|doParallel |1.0.17 |1.0.17 | | +|evaluate |1.0.1 |1.0.1 | | +|farver |2.1.2 |2.1.2 | | +|fastmap |1.2.0 |1.2.0 | | +|fontawesome |0.5.2 |0.5.2 | | +|foreach |1.5.2 |1.5.2 | | +|fs |1.6.4 |1.6.4 | | +|gap |1.6 |1.6 | | +|gap.datasets |0.0.6 |0.0.6 | | +|ggplot2 |3.5.1 |3.5.1 | | +|glue |NA |1.8.0 |* | +|gtable |0.3.5 |0.3.5 | | +|highr |0.11 |0.11 | | +|htmltools |0.5.8.1 |0.5.8.1 | | +|htmlwidgets |1.6.4 |1.6.4 | | +|httpuv |1.6.15 |1.6.15 | | +|httr |1.4.7 |1.4.7 | | +|isoband |0.2.7 |0.2.7 | | +|iterators |1.0.14 |1.0.14 | | +|jquerylib |0.1.4 |0.1.4 | | +|jsonlite |1.8.9 |1.8.9 | | +|knitr |1.48 |1.48 | | +|labeling |0.4.3 |0.4.3 | | +|later |1.3.2 |1.3.2 | | +|lazyeval |0.2.2 |0.2.2 | | +|lme4 |1.1-35.5 |1.1-35.5 | | +|lmtest |0.9-40 |0.9-40 | | +|memoise |2.0.1 |2.0.1 | | +|mime |0.12 |0.12 | | +|minqa |1.2.8 |1.2.8 | | +|munsell |0.5.1 |0.5.1 | | +|nloptr |2.1.1 |2.1.1 | | +|openssl |2.2.2 |2.2.2 | | +|plotly |4.10.4 |4.10.4 | | +|plyr |1.8.9 |1.8.9 | | +|promises |1.3.0 |1.3.0 | | +|qgam |1.3.4 |1.3.4 | | +|rappdirs |0.3.3 |0.3.3 | | +|rbibutils |2.3 |2.3 | | +|RColorBrewer |1.1-3 |1.1-3 | | +|Rcpp |1.0.13 |1.0.13 | | +|RcppEigen |0.3.4.0.2 |0.3.4.0.2 | | +|Rdpack |2.6.1 |2.6.1 | | +|rmarkdown |2.28 |2.28 | | +|sass |0.4.9 |0.4.9 | | +|scales |1.3.0 |1.3.0 | | +|shiny |1.9.1 |1.9.1 | | +|sourcetools |0.1.7-1 |0.1.7-1 | | +|sys |3.4.3 |3.4.3 | | +|tinytex |0.53 |0.53 | | +|viridisLite |0.4.2 |0.4.2 | | +|xfun |0.48 |0.48 | | +|xtable |1.8-4 |1.8-4 | | +|yaml |2.3.10 |2.3.10 | | +|zoo |1.8-12 |1.8-12 | | + +# Revdeps + +## Failed to check (6) + +|package |version |error |warning |note | +|:-------------|:-------|:-----|:-------|:----| +|BayesianTools |0.1.8 |1 | | | +|eDITH |1.0.0 |1 | | | +|ewp |0.1.1 |1 | | | +|glmmTMB |1.1.10 |1 | | | +|phyr |1.1.0 |1 | |1 | +|sdmTMB |0.6.0 |1 | | | + diff --git a/DHARMa/revdep/cran.md b/DHARMa/revdep/cran.md new file mode 100644 index 0000000..41c374e --- /dev/null +++ b/DHARMa/revdep/cran.md @@ -0,0 +1,17 @@ +## revdepcheck results + +We checked 16 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. + + * We saw 0 new problems + * We failed to check 6 packages + +Issues with CRAN packages are summarised below. + +### Failed to check + +* BayesianTools (NA) +* eDITH (NA) +* ewp (NA) +* glmmTMB (NA) +* phyr (NA) +* sdmTMB (NA) diff --git a/DHARMa/revdep/failures.md b/DHARMa/revdep/failures.md new file mode 100644 index 0000000..4082973 --- /dev/null +++ b/DHARMa/revdep/failures.md @@ -0,0 +1,433 @@ +# BayesianTools + +
+ +* Version: 0.1.8 +* GitHub: https://github.com/florianhartig/BayesianTools +* Source code: https://github.com/cran/BayesianTools +* Date/Publication: 2023-01-30 19:40:07 UTC +* Number of recursive dependencies: 144 + +Run `revdepcheck::revdep_details(, "BayesianTools")` for more info + +
+ +## In both + +* checking whether package ‘BayesianTools’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/melinaleite/github/DHARMa/DHARMa/revdep/checks.noindex/BayesianTools/new/BayesianTools.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘BayesianTools’ ... +** pacote ‘BayesianTools’ desempacotado com sucesso e somas MD5 verificadas +** using staged installation +** libs +using C compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.3)’ +using C++ compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.3)’ +using SDK: ‘MacOSX15.0.sdk’ +clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from RcppExports.cpp:4: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/Rcpp/include/Rcpp.h:27: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/Rcpp/include/RcppCommon.h:30: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/Rcpp/include/Rcpp/r/headers.h:66: +/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/Rcpp/include/Rcpp/platform/compiler.h:100:10: fatal error: 'cmath' file not found + 100 | #include + | ^~~~~~~ +1 error generated. +make: *** [RcppExports.o] Error 1 +ERROR: compilation failed for package ‘BayesianTools’ +* removing ‘/Users/melinaleite/github/DHARMa/DHARMa/revdep/checks.noindex/BayesianTools/new/BayesianTools.Rcheck/BayesianTools’ + + +``` +### CRAN + +``` +* installing *source* package ‘BayesianTools’ ... +** pacote ‘BayesianTools’ desempacotado com sucesso e somas MD5 verificadas +** using staged installation +** libs +using C compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.3)’ +using C++ compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.3)’ +using SDK: ‘MacOSX15.0.sdk’ +clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from RcppExports.cpp:4: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/Rcpp/include/Rcpp.h:27: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/Rcpp/include/RcppCommon.h:30: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/Rcpp/include/Rcpp/r/headers.h:66: +/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/Rcpp/include/Rcpp/platform/compiler.h:100:10: fatal error: 'cmath' file not found + 100 | #include + | ^~~~~~~ +1 error generated. +make: *** [RcppExports.o] Error 1 +ERROR: compilation failed for package ‘BayesianTools’ +* removing ‘/Users/melinaleite/github/DHARMa/DHARMa/revdep/checks.noindex/BayesianTools/old/BayesianTools.Rcheck/BayesianTools’ + + +``` +# eDITH + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/lucarraro/eDITH +* Source code: https://github.com/cran/eDITH +* Date/Publication: 2024-05-24 09:30:08 UTC +* Number of recursive dependencies: 171 + +Run `revdepcheck::revdep_details(, "eDITH")` for more info + +
+ +## In both + +* checking whether package ‘eDITH’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/melinaleite/github/DHARMa/DHARMa/revdep/checks.noindex/eDITH/new/eDITH.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘eDITH’ ... +** pacote ‘eDITH’ desempacotado com sucesso e somas MD5 verificadas +** using staged installation +** libs +using C++ compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.3)’ +using SDK: ‘MacOSX15.0.sdk’ +clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from RcppExports.cpp:4: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/Rcpp/include/Rcpp.h:27: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/Rcpp/include/RcppCommon.h:30: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/Rcpp/include/Rcpp/r/headers.h:66: +/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/Rcpp/include/Rcpp/platform/compiler.h:100:10: fatal error: 'cmath' file not found + 100 | #include + | ^~~~~~~ +1 error generated. +make: *** [RcppExports.o] Error 1 +ERROR: compilation failed for package ‘eDITH’ +* removing ‘/Users/melinaleite/github/DHARMa/DHARMa/revdep/checks.noindex/eDITH/new/eDITH.Rcheck/eDITH’ + + +``` +### CRAN + +``` +* installing *source* package ‘eDITH’ ... +** pacote ‘eDITH’ desempacotado com sucesso e somas MD5 verificadas +** using staged installation +** libs +using C++ compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.3)’ +using SDK: ‘MacOSX15.0.sdk’ +clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from RcppExports.cpp:4: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/Rcpp/include/Rcpp.h:27: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/Rcpp/include/RcppCommon.h:30: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/Rcpp/include/Rcpp/r/headers.h:66: +/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/Rcpp/include/Rcpp/platform/compiler.h:100:10: fatal error: 'cmath' file not found + 100 | #include + | ^~~~~~~ +1 error generated. +make: *** [RcppExports.o] Error 1 +ERROR: compilation failed for package ‘eDITH’ +* removing ‘/Users/melinaleite/github/DHARMa/DHARMa/revdep/checks.noindex/eDITH/old/eDITH.Rcheck/eDITH’ + + +``` +# ewp + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/ewp +* Date/Publication: 2024-06-26 12:50:02 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::revdep_details(, "ewp")` for more info + +
+ +## In both + +* checking whether package ‘ewp’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/melinaleite/github/DHARMa/DHARMa/revdep/checks.noindex/ewp/new/ewp.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ewp’ ... +** pacote ‘ewp’ desempacotado com sucesso e somas MD5 verificadas +** using staged installation +** libs +using C++ compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.3)’ +using SDK: ‘MacOSX15.0.sdk’ +clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/ewp/BH/include' -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from RcppExports.cpp:4: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/Rcpp/include/Rcpp.h:27: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/Rcpp/include/RcppCommon.h:30: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/Rcpp/include/Rcpp/r/headers.h:66: +/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/Rcpp/include/Rcpp/platform/compiler.h:100:10: fatal error: 'cmath' file not found + 100 | #include + | ^~~~~~~ +1 error generated. +make: *** [RcppExports.o] Error 1 +ERROR: compilation failed for package ‘ewp’ +* removing ‘/Users/melinaleite/github/DHARMa/DHARMa/revdep/checks.noindex/ewp/new/ewp.Rcheck/ewp’ + + +``` +### CRAN + +``` +* installing *source* package ‘ewp’ ... +** pacote ‘ewp’ desempacotado com sucesso e somas MD5 verificadas +** using staged installation +** libs +using C++ compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.3)’ +using SDK: ‘MacOSX15.0.sdk’ +clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/ewp/BH/include' -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from RcppExports.cpp:4: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/Rcpp/include/Rcpp.h:27: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/Rcpp/include/RcppCommon.h:30: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/Rcpp/include/Rcpp/r/headers.h:66: +/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/Rcpp/include/Rcpp/platform/compiler.h:100:10: fatal error: 'cmath' file not found + 100 | #include + | ^~~~~~~ +1 error generated. +make: *** [RcppExports.o] Error 1 +ERROR: compilation failed for package ‘ewp’ +* removing ‘/Users/melinaleite/github/DHARMa/DHARMa/revdep/checks.noindex/ewp/old/ewp.Rcheck/ewp’ + + +``` +# glmmTMB + +
+ +* Version: 1.1.10 +* GitHub: https://github.com/glmmTMB/glmmTMB +* Source code: https://github.com/cran/glmmTMB +* Date/Publication: 2024-09-26 22:50:02 UTC +* Number of recursive dependencies: 172 + +Run `revdepcheck::revdep_details(, "glmmTMB")` for more info + +
+ +## In both + +* checking whether package ‘glmmTMB’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/melinaleite/github/DHARMa/DHARMa/revdep/checks.noindex/glmmTMB/new/glmmTMB.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘glmmTMB’ ... +** pacote ‘glmmTMB’ desempacotado com sucesso e somas MD5 verificadas +** using staged installation +** libs +using C++ compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.3)’ +using SDK: ‘MacOSX15.0.sdk’ +clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/glmmTMB/TMB/include' -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c glmmTMB.cpp -o glmmTMB.o +In file included from glmmTMB.cpp:2: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/glmmTMB/TMB/include/TMB.hpp:45: +/Library/Frameworks/R.framework/Resources/include/R_ext/Print.h:36:12: fatal error: 'cstdarg' file not found + 36 | # include + | ^~~~~~~~~ +1 error generated. +make: *** [glmmTMB.o] Error 1 +ERROR: compilation failed for package ‘glmmTMB’ +* removing ‘/Users/melinaleite/github/DHARMa/DHARMa/revdep/checks.noindex/glmmTMB/new/glmmTMB.Rcheck/glmmTMB’ + + +``` +### CRAN + +``` +* installing *source* package ‘glmmTMB’ ... +** pacote ‘glmmTMB’ desempacotado com sucesso e somas MD5 verificadas +** using staged installation +** libs +using C++ compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.3)’ +using SDK: ‘MacOSX15.0.sdk’ +clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/glmmTMB/TMB/include' -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c glmmTMB.cpp -o glmmTMB.o +In file included from glmmTMB.cpp:2: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/glmmTMB/TMB/include/TMB.hpp:45: +/Library/Frameworks/R.framework/Resources/include/R_ext/Print.h:36:12: fatal error: 'cstdarg' file not found + 36 | # include + | ^~~~~~~~~ +1 error generated. +make: *** [glmmTMB.o] Error 1 +ERROR: compilation failed for package ‘glmmTMB’ +* removing ‘/Users/melinaleite/github/DHARMa/DHARMa/revdep/checks.noindex/glmmTMB/old/glmmTMB.Rcheck/glmmTMB’ + + +``` +# phyr + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/daijiang/phyr +* Source code: https://github.com/cran/phyr +* Date/Publication: 2020-12-18 07:30:05 UTC +* Number of recursive dependencies: 195 + +Run `revdepcheck::revdep_details(, "phyr")` for more info + +
+ +## In both + +* checking whether package ‘phyr’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/melinaleite/github/DHARMa/DHARMa/revdep/checks.noindex/phyr/new/phyr.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘INLA’ + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘phyr’ ... +** pacote ‘phyr’ desempacotado com sucesso e somas MD5 verificadas +** using staged installation +** libs +using C++ compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.3)’ +using SDK: ‘MacOSX15.0.sdk’ +clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/Rcpp/include' -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/phyr/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from RcppExports.cpp:4: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/phyr/RcppArmadillo/include/RcppArmadillo.h:29: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/phyr/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/Rcpp/include/RcppCommon.h:30: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/Rcpp/include/Rcpp/r/headers.h:66: +/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/Rcpp/include/Rcpp/platform/compiler.h:100:10: fatal error: 'cmath' file not found + 100 | #include + | ^~~~~~~ +1 error generated. +make: *** [RcppExports.o] Error 1 +ERROR: compilation failed for package ‘phyr’ +* removing ‘/Users/melinaleite/github/DHARMa/DHARMa/revdep/checks.noindex/phyr/new/phyr.Rcheck/phyr’ + + +``` +### CRAN + +``` +* installing *source* package ‘phyr’ ... +** pacote ‘phyr’ desempacotado com sucesso e somas MD5 verificadas +** using staged installation +** libs +using C++ compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.3)’ +using SDK: ‘MacOSX15.0.sdk’ +clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/Rcpp/include' -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/phyr/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from RcppExports.cpp:4: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/phyr/RcppArmadillo/include/RcppArmadillo.h:29: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/phyr/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/Rcpp/include/RcppCommon.h:30: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/Rcpp/include/Rcpp/r/headers.h:66: +/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/Rcpp/include/Rcpp/platform/compiler.h:100:10: fatal error: 'cmath' file not found + 100 | #include + | ^~~~~~~ +1 error generated. +make: *** [RcppExports.o] Error 1 +ERROR: compilation failed for package ‘phyr’ +* removing ‘/Users/melinaleite/github/DHARMa/DHARMa/revdep/checks.noindex/phyr/old/phyr.Rcheck/phyr’ + + +``` +# sdmTMB + +
+ +* Version: 0.6.0 +* GitHub: https://github.com/pbs-assess/sdmTMB +* Source code: https://github.com/cran/sdmTMB +* Date/Publication: 2024-05-30 00:00:02 UTC +* Number of recursive dependencies: 150 + +Run `revdepcheck::revdep_details(, "sdmTMB")` for more info + +
+ +## In both + +* checking whether package ‘sdmTMB’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/melinaleite/github/DHARMa/DHARMa/revdep/checks.noindex/sdmTMB/new/sdmTMB.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘sdmTMB’ ... +** pacote ‘sdmTMB’ desempacotado com sucesso e somas MD5 verificadas +** using staged installation +** libs +using C++ compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.3)’ +using SDK: ‘MacOSX15.0.sdk’ +clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/new/RcppEigen/include' -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/sdmTMB/TMB/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sdmTMB.cpp -o sdmTMB.o +In file included from sdmTMB.cpp:3: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/sdmTMB/TMB/include/TMB.hpp:45: +/Library/Frameworks/R.framework/Resources/include/R_ext/Print.h:36:12: fatal error: 'cstdarg' file not found + 36 | # include + | ^~~~~~~~~ +1 error generated. +make: *** [sdmTMB.o] Error 1 +ERROR: compilation failed for package ‘sdmTMB’ +* removing ‘/Users/melinaleite/github/DHARMa/DHARMa/revdep/checks.noindex/sdmTMB/new/sdmTMB.Rcheck/sdmTMB’ + + +``` +### CRAN + +``` +* installing *source* package ‘sdmTMB’ ... +** pacote ‘sdmTMB’ desempacotado com sucesso e somas MD5 verificadas +** using staged installation +** libs +using C++ compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.3)’ +using SDK: ‘MacOSX15.0.sdk’ +clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/DHARMa/old/RcppEigen/include' -I'/Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/sdmTMB/TMB/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sdmTMB.cpp -o sdmTMB.o +In file included from sdmTMB.cpp:3: +In file included from /Users/melinaleite/github/DHARMa/DHARMa/revdep/library.noindex/sdmTMB/TMB/include/TMB.hpp:45: +/Library/Frameworks/R.framework/Resources/include/R_ext/Print.h:36:12: fatal error: 'cstdarg' file not found + 36 | # include + | ^~~~~~~~~ +1 error generated. +make: *** [sdmTMB.o] Error 1 +ERROR: compilation failed for package ‘sdmTMB’ +* removing ‘/Users/melinaleite/github/DHARMa/DHARMa/revdep/checks.noindex/sdmTMB/old/sdmTMB.Rcheck/sdmTMB’ + + +``` diff --git a/DHARMa/revdep/problems.md b/DHARMa/revdep/problems.md new file mode 100644 index 0000000..9a20736 --- /dev/null +++ b/DHARMa/revdep/problems.md @@ -0,0 +1 @@ +*Wow, no problems at all. :)* \ No newline at end of file