DESCRIPTION

Package: FLBEIA
Title: Bio-Economic Impact Assessment of Management Strategies using FLR
Version: 1.16.1.19
Date: 2024-07-16
Authors@R: c(person("FLBEIA", "Team", email = "flbeia@azti.es", role = c("aut","cre")))
Description: A simulation toolbox that describes a fishery system under
  a Management Strategy Estrategy approach. The objective of the model is
  to facilitate the Bio-Economic evaluation of Management strategies. It is
  multistock, multifleet and seasonal. The simulation is divided in 2 main blocks,
  the Operating Model (OM) and the Management Procedure (MP). In turn, each of these
  two blocks is divided in 3 components: the biological, the fleets and the
  covariables on the one hand, and the observation, the assessment and
  the advice on the other.
LinkingTo: Rcpp
Depends:
  methods,
  R(>= 3.5.0),
  ggplot2,
  FLCore (>= 2.6.5),
  FLFleet
Imports:
  stats,
  utils,
  FLXSA,
  FLa4a,
  Matrix,
  FLash,
  mvtnorm,
  mlogit,
  nloptr,
  triangle,
  arrayhelpers,
  dplyr,
  plyr,
  purrr,
  tidyr,
  tidyverse,
  tibble,
  Rcpp
Suggests: R.rsp, spict, XLConnect
Additional_repositories: http://flr-project.org/R
License: GPL (>= 2)
Language: en-GB
Repository: flr
URL: http://flr-project.org/FLBEIA
BugReports: https://github.com/flr/FLBEIA/issues
Collate:
    "genericMethods.R"
    "Class_0a_FLlst-beia.R"
    "Class_0b_FLAccesors_beia.R"
    "Class_1_FLBDsim.R"
    "Class_2_FLSRsim.R"
    "Class_3_FLCatchExt.R"
    "Class_4_FLMetierExt.R"
    "Class_5_FLFleetExt.R"
    "Auxiliary_Functions_biolfleets2flstock.R"
    "Auxiliary_Functions_Calculations_exem.R"
    "Auxiliary_Functions_Checks.R"
    "Auxiliary_Functions_Data_Manipulation.R"
    "Auxiliary_Functions_Effort_Dynamics.R"
    "Auxiliary_Functions_Observation_Model.R"
    "Auxiliary_Functions_Population_Dynamics.R"
    "Auxiliary_Functions_remove_units.R"
    "Auxiliary_Functions_xtabs2.R"
    "setPlusGroupFLBiol.R"                       
    "stf_correctSel.R"
    "Conditioning_1_CobbDouglasFit.R"
    "Conditioning_2_SelAtAge.R"
    "Conditioning_calculate.CDparam.R"
    "Conditioning_create.advice.data.R"
    "Conditioning_create.BDs.data.R"
    "Conditioning_create.biol.arrays.R"
    "Conditioning_create.biols.data.R"
    "Conditioning_create.ecoData.arrays.R"
    "Conditioning_create.fleets.arrays.R"
    "Conditioning_create.fleets.data.R"
    "Conditioning_create.indices.data.R"
    "Conditioning_create.list.stks.flq.R"
    "Conditioning_create.list.stks.flqa.R"
    "Conditioning_create.SRs.data.R"
    "Conditioning_CtrlCreators_advice.r"
    "Conditioning_CtrlCreators_assessment.r"
    "Conditioning_CtrlCreators_biols.R"
    "Conditioning_CtrlCreators_covars.r"
    "Conditioning_CtrlCreators_fleets.r"
    "Conditioning_CtrlCreators_Observation.r"
    "Conditioning_InitialPop.R"
    "data.R"
    "ecoSum_DAMARA_function.R"
    "Functions_Checks.R"
    "Functions_FLFleet.R"
    "Functions_FLFleets.R"
    "MAIN_Function.R"
    "Method_propagate_FLFleet.R"
    "MP_1_Observation.R"
    "MP_1a_Observation_Model.R"
    "MP_1b_Observation_Model_Functions.R"
    "MP_2_Assessment.R"
    "MP_2_Assessment_sca2flbeia.R"
    "MP_2_Assessment_spict2flbeia.R"
    "MP_3_Advice.R"
    "MP_3a_fwdBD.R"
    "MP_3a_fwdBDControl.R"
    "MP_3b_HCRs.R"
    "MP_3c_HCR_BoBane.R"
    "MP_3c_HCR_BoBane_JD.R"
    "MP_3c_HCR_F2CatchHCR.R"
    "MP_3c_HCR_Froese.R"
    "MP_3c_HCR_ICES_MSY.R"
    "MP_3c_HCR_neaMAC_ltmp.R"
    "MP_3c_HCRE_ane.R"
    "MP_3d_HCR_AnnexIV.R"
    "MP_3d_HCR_GHL.R"
    "MP_3d_HCR_ICES_Cat3.R"
    "MP_3d_HCR_ICES_Cat3_bsafe_hrcap.R"
    "MP_3e_HCR_SWWMAP.R"
    "MP_3f_CFP_MSY_HCR.R"
    "MP_3g_MultiStockHCR.R"
    "MP_3h_ModelFreeHCR.R"
    "OM_1_biol.om.R"
    "OM_1a_Population_Growth_Functions.R"
    "OM_1a1_Stock_Recruitment_functions.R"
    "OM_1a1_Stock_Recruitment_functions_segregmix.R"
    "OM_1a2_DensityDependent_weight_functions.R"
    "OM_2_fleet.om.R"
    "OM_2a_Effort_Dynamics.R"
    "OM_2a_Effort_Dynamics_Auxiliary.R"
    "OM_2a_Effort_Dynamics_LO_functions_exem.R"
    "OM_2a_Effort_Dynamics_LO_MaxProf.R"
    "OM_2a_Effort_Dynamics_LO_QuotaSwap_exem.R"
    "OM_2a_Effort_Dynamics_MaxProf.R"
    "OM_2a_Effort_Dynamics_SMFB.R"
    "OM_2a_Effort_Dynamics_SMFB_VarEffortShare.R"
    "OM_2a1_Catch_Production_Functions.R"
    "OM_2a1_catchability2zero.R"
    "OM_2b_EffDyn_TAC_OverS_Func.R"
    "OM_2b_Update_catch.R"
    "OM_2c_Price_Dynamics.R"
    "OM_2d_Fleet_Capital_Dynamics.R"
    "OM_2e_CapitalDyn_SCD.R"
    "OM_3_covars.om.R"
    "PlotEco.R"
    "PlotFLBiols.R"
    "PlotFLFleets.R"
    "PlotfltStkSum.R"
    "Results_JoinIterations.R"
    "Results_Summary.R"
    "Results_SummaryPlots.R"
    "brps_seasonal.R"
    "RcppExports.R"
VignetteBuilder: R.rsp
RoxygenNote: 7.2.2