-
Notifications
You must be signed in to change notification settings - Fork 6
/
NAMESPACE
177 lines (176 loc) · 4.02 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
import("methods")
import("FLCore")
import("mgcv")
import("triangle")
importFrom("copula",
ellipCopula,
archmCopula,
rMvdc,
mvdc)
importFrom("graphics",
abline, axis, legend, mtext, par)
importFrom("lattice",
qqmath, panel.xyplot, panel.abline, prepanel.qqmathline, panel.qqmathline,
panel.qqmath, panel.grid, panel.polygon, panel.segments)
importFrom("Matrix",
bdiag,Diagonal,Matrix)
importClassesFrom("Matrix",
dsCMatrix,Matrix)
importFrom("coda",
mcmc, as.mcmc)
importFrom("utils",
capture.output, read.table, write.table, sessionInfo)
importFrom("stats",
runif, cor, complete.cases, cov2cor, formula, model.matrix, qnorm,
as.formula, "nlminb", "optimHess", "BIC")
importFrom("utils",
"combn")
importFrom("grid",
textGrob,
gpar)
importFrom("gridExtra",
grid.arrange)
import("latticeExtra")
export(collapseSeasons)
export(getADMBHessian)
export(getADMBCovariance)
export(getCov)
export(is.empty)
export(getTPL)
export(defaultFmod)
export(defaultQmod)
export(defaultN1mod)
export(defaultVmod)
export(defaultSRmod)
export(a4aSCA)
export(sca.sa)
export(scas)
export(sep.sa)
#export(makePrediction)
#export(os.32or64bit)
#export(os.type)
#export(plotIters)
exportClasses(a4aFit)
exportClasses(a4aFits)
exportClasses(a4aFitResiduals)
exportClasses(a4aFitSA)
exportClasses(a4aFitSAs)
exportClasses(a4aFitMCMC)
exportClasses(a4aFitMCMCs)
exportClasses(a4aFitCatchDiagn)
exportClasses(a4aGr)
exportClasses(a4aM)
exportClasses(SCAMCMC)
exportClasses(SCAPars)
exportClasses(a4aStkParams)
exportClasses(submodel)
exportClasses(submodels)
exportMethods("distr<-")
exportMethods("grInvMod<-")
exportMethods("grMod<-")
exportMethods("level<-")
exportMethods("params<-")
exportMethods("formula<-")
#exportMethods("rngage<-")
#exportMethods("rngquant<-")
#exportMethods("rnglen<-")
#exportMethods("rngmbar<-")
#exportMethods("rngyear<-")
exportMethods("shape<-")
exportMethods("trend<-")
exportMethods(coefficients)
exportMethods("coefficients<-")
exportMethods(as.mcmc)
exportMethods(a4aFit)
exportMethods(a4aFits)
exportMethods(a4aFitSA)
exportMethods(a4aFitSAs)
exportMethods(a4aFitMCMC)
exportMethods(a4aFitMCMCs)
exportMethods(a4aGr)
exportMethods(a4aM)
exportMethods(breakpts)
exportMethods(bubbles)
exportMethods(burnin)
exportMethods(clock)
exportMethods(coef)
exportMethods(computeCatchDiagnostics)
exportMethods(covar)
#exportMethods(designMatrix)
exportMethods(dims)
exportMethods(distr)
exportMethods(fCovar)
exportMethods(fFrml)
exportMethods(fitSumm)
#exportMethods(FLblockboot)
#exportMethods(FLBstar)
exportMethods(formula)
exportMethods(fmodel)
exportMethods(fPars)
exportMethods(genFLIndex)
exportMethods(genFLQuant)
exportMethods(genFLStock)
exportMethods(getAcor)
exportMethods(getADMBCallArgs)
exportMethods(getK)
exportMethods(getN)
exportMethods(getX)
exportMethods(getYidx)
#exportMethods(grad)
exportMethods(grInvMod)
exportMethods(grMod)
exportMethods(iter)
exportMethods(l2a)
exportMethods(level)
exportMethods(m)
exportMethods(ma)
exportMethods(model)
exportMethods(mvrcop)
exportMethods(mvrnorm)
exportMethods(mvrtriangle)
exportMethods(n1model)
exportMethods(niters)
exportMethods(params)
exportMethods(pars)
exportMethods(pars2dim)
exportMethods(plot)
exportMethods(predict)
exportMethods(qCovar)
exportMethods(qFrml)
exportMethods(qmodel)
exportMethods(qPars)
exportMethods(qqmath)
#exportMethods(ra)
exportMethods(range)
exportMethods(residuals)
exportMethods(replaceZeros)
#exportMethods(rngage)
#exportMethods(rngquant)
#exportMethods(rnglen)
#exportMethods(rngmbar)
#exportMethods(rngyear)
exportMethods(sca)
exportMethods(SCAMCMC)
exportMethods(SCAPars)
exportMethods(shape)
exportMethods(simulate)
exportMethods(srCovar)
exportMethods(srFrml)
exportMethods(srmodel)
exportMethods(srPars)
exportMethods(stdlogres)
exportMethods(stkmodel)
exportMethods(submodel)
exportMethods(submodels)
exportMethods(trend)
exportMethods(vCovar)
#exportMethods(vecage)
#exportMethods(vecquant)
#exportMethods(veclen)
#exportMethods(vecmbar)
#exportMethods(vecyear)
exportMethods(vFrml)
exportMethods(vmodel)
exportMethods(vPars)
exportMethods(wireframe)
exportMethods(wt)