new roxizenised man pages

.Rbuildignore

@@ -12,3 +12,4 @@ tests/wcsam.R
 ^.*\.Rproj$
 ^\.Rproj\.user$
 docs/
+^README\.Rmd$

DESCRIPTION

@@ -67,5 +67,5 @@ Collate:
     'southern_hake-data.R'
     'a4amse-sa.R'
     'a4aFitCatchDiagn-class.R'
-RoxygenNote: 7.2.1
+RoxygenNote: 7.3.2
 Encoding: UTF-8

NEWS.md

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+# FLa4a 1.9.x:
+
+## NEW FEATURES
+- plot for residuals by age
+- multisca method to run several sca
+
+## BUG FIXES:
+- sca use of covariates fixed
+
+# FLa4a 1.8.x:
+
+## NEW FEATURES
+- pearson and raw residuals
+- method replaceZeros for stock and index objects
+- mse sca now replaces zeros before calling fit
+
+## BUG FIXES:
+- problem dealing with iters that don't converged fixed. Related with 'active'.
+- sca.sa fixed to be compatible with mse 2.0
+
 # FLa4a 1.6.5:
 
 ## NEW FEATURES

README.Rmd

@@ -0,0 +1,55 @@
+---
+output: github_document
+---
+
+<!-- README.md is generated from README.Rmd. Please edit that file -->
+
+```{r, include = FALSE}
+knitr::opts_chunk$set(
+  collapse = TRUE,
+  comment = "#>",
+  fig.path = "man/figures/README-",
+  out.width = "100%"
+)
+```
+
+# FLa4a
+
+<!-- badges: start -->
+<!-- badges: end -->
+
+The goal of FLa4a is to ...
+
+## Installation
+
+You can install the development version of FLa4a from [GitHub](https://github.com/) with:
+
+``` r
+# install.packages("pak")
+pak::pak("flr/FLa4a")
+```
+
+## Example
+
+This is a basic example which shows you how to solve a common problem:
+
+```{r example}
+library(FLa4a)
+## basic example code
+```
+
+What is special about using `README.Rmd` instead of just `README.md`? You can include R chunks like so:
+
+```{r cars}
+summary(cars)
+```
+
+You'll still need to render `README.Rmd` regularly, to keep `README.md` up-to-date. `devtools::build_readme()` is handy for this.
+
+You can also embed plots, for example:
+
+```{r pressure, echo = FALSE}
+plot(pressure)
+```
+
+In that case, don't forget to commit and push the resulting figure files, so they display on GitHub and CRAN.

README.md

@@ -1,7 +1,7 @@
 # FLa4a
-- Version: 1.8.3
+- Version: 1.9.0
 - Author: Colin P. Millar and Ernesto Jardim
-- Maintainer: Ernesto Jardim <ernesto.jardim AT jrc.ec.europa.eu>
+- Maintainer: Colin P. Millar <colin.millar AT ices.dk>
 - Repository: <https://github.com/flr/FLa4a/>
 - Bug reports: <https://github.com/flr/FLa4a/issues>