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NEWS
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FLasher 0.6.7
BUG FIXES
- Ensure max effort input in .Call is numeric.
- Changed tolerance in solver to match all.equal's default: 1.5e-8.
- Getting different spawn seasons to work.
- Setting to zero rec in seasons < spawn.season.
- Fix to discards ratio when discards.n is zero.
- Bug in coertion of FLQuants with iters to fwdControl.
- Add na.rm argument for discard ratio in stf().
- sratio now properly applied for either 1 or 2 sex models in bevholtss3.
FLasher 0.6.6
USER-VISIBLE CHANGES
- Minimum value for 'f' or 'fbar' targets has been set at
sqrt(.Machine$double.eps) ~ 1.5e-08.
- Added sr as FLQuant argument to fwd(FLStock). The vector by year is converted
into a predictModel with rec~a and a yearly value for a.
BUG FIXES
- Separation of large Jacobian matrix in solver.cpp was operating as in iters
were organized target first, but they are iter first.
- Ensure subset of deviances returns an FLQuants.
- solver.cpp update to work properly with biols and fisheries with multiple
iterations.
- Bug in coertion of FLQuants with iters to fwdControl.
NEW FEATURES
- FCB(FLBiols, FLFisheries) method class guessfcb and fcb2nit to return a guess
for FCB.
- stf(FLStocks) simply calls lapply, uses same settings on all elements.
- partialF method returns the partial Fs by fleet for each FLBiol.
FLasher 0.6.1
NEW FEATURES
- fwdControl(FLQuant) also accepts extra target arguments (e.g. relYear).
FLasher 0.6.0
NEW FEATURES
- compare() method draws a comparison between targets in a fwdControl
object and the results returned. Available for FLStock at this moment.
- maxF argument to fwd(FLStock) is implemented through an additional target
per timestep with max(fbar) = maxF, rather than by an indirect limit of
the effort calculation. It bis not applied for steps with an f/fbar
target.
- Functions are now available for the corresponding ssb and biomass targets
used by fwdControl: ssb_end, biomass_end and biomass_spawn
BUG FIXES
- Calculation of survivors for stocks/biols with age=0 was not correct.
FLasher 0.5.0
NEW FEATURES
- effort_max argument to fwd() set a maximum valuw for effort. Similar to FLash::maxF, as scale of effort values in fwd(FLStock) is set by fbar.
- Certain slots in FLStock are checked for NAs in year before projection to avoid R crashing.
- New stock-recruitment relationship added, survsrr, for low fecundity species (Taylor et al, 2013).
- Projections are now correct for multiple units, either sex or birth seasons.
USER-VISIBLE CHANGES
- The residuals argument to fwd() is now called 'deviances', and this name is used in all R and C++ code. 'residuals' is still accepted, but will be deprecated in the next minor version.
BUG FIXES
- SRR predictions now work correctly for 2-sex OMs (FLStock or FLBiol).
- Check for fwdControl rows not being all NA.
FLasher 0.0.4
NEW FEATURES
- plot(FLStock, fwdControl) will add to the ggplotFL plot of an FLStock a
coloured area of the years being projected.
BUG FIXES
- fwd(FLStock) now returns one more year if quant='ssb_flash' and object has space for it.
USER-VISIBLE CHANGES
- Added disc.nyears arg to stf() to select years to use for discards ratio calculations.
- If min and max for the very same target are set in separate rows, they are merged.
FLasher 0.0.3
BUG FIXES
- Fixed stupid intermittant bug in projection test
- Added stf to Namespace
- Fixed bug setting relMinAge etc and added simple projection tests
- Fixed coerce FLQuant to fwdControl with iters
DOCUMENTATION
- Edits to mixed fishery vignette and new introductory vignette