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1. octoFLU octoFLU Public

   Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.

   Python 9 7

2. smot smot Public

   Simple Manipulation Of Trees

   Python 13 4

3. rf-net-2 rf-net-2 Public

   Phylogenetic network inference for reassortment detection using rf-net-2

   6 1

4. parnas parnas Public

   Phylogenetic maximum representation sampling: choosing most representative strains or taxa

   Python 29 2

5. classLog classLog Public

   Zeller et al. Logistic regression classifier for genetic sequences

   Python 3 1

6. TreeSort TreeSort Public

   Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.

   Python 8