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Bug fix for reference name not matching 'reference.fa'
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Cmnorris7 committed May 21, 2024
1 parent 5d6b450 commit ccc30bb
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2 changes: 1 addition & 1 deletion Flumina
Original file line number Diff line number Diff line change
Expand Up @@ -50,7 +50,7 @@ else
fi

#Copies reference to output directory so snakefile can find it
cp "$REFERENCE_FILE" "$OUTPUT_DIRECTORY"
cp "$REFERENCE_FILE" "$OUTPUT_DIRECTORY"/reference.fa

#Export variable to global env
export CLUSTER_JOBS
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