Merge pull request #2 from USDA-VS/upstream

Bug fix for reference name not matching 'reference.fa'
flu-crew · May 22, 2024 · fd43d0f · fd43d0f
2 parents 5d6b450 + ccc30bb
commit fd43d0f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/Flumina b/Flumina
@@ -50,7 +50,7 @@ else
 fi
 
 #Copies reference to output directory so snakefile can find it
-cp "$REFERENCE_FILE" "$OUTPUT_DIRECTORY"
+cp "$REFERENCE_FILE" "$OUTPUT_DIRECTORY"/reference.fa
 
 #Export variable to global env
 export CLUSTER_JOBS