RR1_16S_data

This repository includes files and code related to data from Romaine Rally I samples. These samples were part of a pilot study comparing aggregative swabs of romaine lettuce to romaine lettuce tissue samples from a field in Salinas, CA. The study used romaine lettuce from a local grocery store as an outgroup. The sequencing was done using full length 16S rRNA sequencing on a PacBio instrument.

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Repository files navigation

RR1_16S_data

About

Releases

Packages

Name		Name	Last commit message	Last commit date
Latest commit History 27 Commits
IT1_bc1009--bc1060.hifi_reads.fastq.gz		IT1_bc1009--bc1060.hifi_reads.fastq.gz
IT3_bc1010--bc1060.hifi_reads.fastq.gz		IT3_bc1010--bc1060.hifi_reads.fastq.gz
MT10_bc1002--bc1059.hifi_reads.fastq.gz		MT10_bc1002--bc1059.hifi_reads.fastq.gz
MT11_bc1003--bc1059.hifi_reads.fastq.gz		MT11_bc1003--bc1059.hifi_reads.fastq.gz
MT12_bc1004--bc1059.hifi_reads.fastq.gz		MT12_bc1004--bc1059.hifi_reads.fastq.gz
MT1_bc1005--bc1057.hifi_reads.fastq.gz		MT1_bc1005--bc1057.hifi_reads.fastq.gz
MT2_bc1002--bc1057.hifi_reads.fastq.gz		MT2_bc1002--bc1057.hifi_reads.fastq.gz
MT4_bc1004--bc1057.hifi_reads.fastq.gz		MT4_bc1004--bc1057.hifi_reads.fastq.gz
MT5_bc1009--bc1057.hifi_reads.fastq.gz		MT5_bc1009--bc1057.hifi_reads.fastq.gz
MT6_bc1006--bc1057.hifi_reads.fastq.gz		MT6_bc1006--bc1057.hifi_reads.fastq.gz
MT8_bc1011--bc1057.hifi_reads.fastq.gz		MT8_bc1011--bc1057.hifi_reads.fastq.gz
R code with notes.Rmd		R code with notes.Rmd
R1_bc1009--bc1059.hifi_reads.fastq.gz		R1_bc1009--bc1059.hifi_reads.fastq.gz
R2_bc1006--bc1059.hifi_reads.fastq.gz		R2_bc1006--bc1059.hifi_reads.fastq.gz
R3_bc1010--bc1059.hifi_reads.fastq.gz		R3_bc1010--bc1059.hifi_reads.fastq.gz
R4_bc1011--bc1059.hifi_reads.fastq.gz		R4_bc1011--bc1059.hifi_reads.fastq.gz
R5_bc1005--bc1060.hifi_reads.fastq.gz		R5_bc1005--bc1060.hifi_reads.fastq.gz
README.md		README.md
SS1_bc1005--bc1056.hifi_reads.fastq.gz		SS1_bc1005--bc1056.hifi_reads.fastq.gz
SS2_bc1002--bc1056.hifi_reads.fastq.gz		SS2_bc1002--bc1056.hifi_reads.fastq.gz
SS3_bc1003--bc1056.hifi_reads.fastq.gz		SS3_bc1003--bc1056.hifi_reads.fastq.gz
SS4_bc1004--bc1056.hifi_reads.fastq.gz		SS4_bc1004--bc1056.hifi_reads.fastq.gz
SS5_bc1009--bc1056.hifi_reads.fastq.gz		SS5_bc1009--bc1056.hifi_reads.fastq.gz
SS6_bc1006--bc1056.hifi_reads.fastq.gz		SS6_bc1006--bc1056.hifi_reads.fastq.gz
SS7_bc1010--bc1056.hifi_reads.fastq.gz		SS7_bc1010--bc1056.hifi_reads.fastq.gz
SS8_bc1011--bc1056.hifi_reads.fastq.gz		SS8_bc1011--bc1056.hifi_reads.fastq.gz
UT3_bc1004--bc1060.hifi_reads.fastq.gz		UT3_bc1004--bc1060.hifi_reads.fastq.gz

foodsafetylab/Swab_and_tissue_microbiome

Folders and files

Latest commit

History

Repository files navigation

RR1_16S_data

About

Resources

Stars

Watchers

Forks

Releases

Packages 0

Packages