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INSTALL
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INSTALL
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Required:
* Python 2.7.0 (or higher but not Python 3):
If Python is not installed on your system, one can download
the installation source from www.python.org. The website
contains detailed instructions on how to install. There are
pre-compiled binaries for selected systems. Python and most
of its libraries are open-source.
* numpy, scipy, and Deap Python libraries:
One can check if numpy/scipy libraries are already installed on your system
by going into the interactive mode of Python (for example, by
typing "python" at the prompt of a Linux/Unix system) and attempting
"import numpy", "import pyevolve, and "import scipy".
The source of numpy and scipy with detailed installation instructions
can be downloded from www.scipy.org. There are pre-compiled binaries for
selected systems. For the Deap library, visit https://pypi.python.org/pypi/deap
* "Engine":
The BSD licensed Mengine software from www.serenasoft.com has
to be installed. The Mengine source code is located in the ParFit/Mengine directory.
Update the variable engine_path = “” in the file: ParFit/_Engine.py to the location of
the MM ENGINE executable file.
Optional:
* matplotlib Python library:
Matplotlib is a nice plotting facility within Python that is quite handy for
a visual comparison of target and fitted curves. One can check if it
is already available by "import matplotlib". The website for installation
is matlplotlib.org.