From bcac01114c60feeee4e7dcd86cd7f480d8424939 Mon Sep 17 00:00:00 2001
From: Eric Rasche <rasche.eric@gmail.com>
Date: Tue, 13 Sep 2016 20:11:58 +0000
Subject: [PATCH] Remove old, gzip auto

---
 build.sh | 15 +++++----------
 1 file changed, 5 insertions(+), 10 deletions(-)

diff --git a/build.sh b/build.sh
index 13691ff..a72350c 100755
--- a/build.sh
+++ b/build.sh
@@ -14,6 +14,8 @@ cd "Chado-${BRANCH}/chado/" || exit;
 patch -p1 < /opt/fix_relationshiptype_lc.diff
 
 mv /opt/load.conf.tt2 /build/Chado-${BRANCH}/chado/load/tt2/load.conf.tt2
+# Remove old versions in case bad things happen
+rm /host/*
 
 VERSION=$(cat Makefile.PL | grep 'my $VERSION' | sed 's/.* = //g;s/;//';)
 
@@ -22,7 +24,7 @@ make
 make install
 make load_schema
 make prepdb
-pg_dump -h localhost -p 5432 -U postgres --no-owner --no-acl postgres > "/host/chado-${VERSION}-no-onto.sql"
+pg_dump -h localhost -p 5432 -U postgres --no-owner --no-acl postgres | gzip > "/host/chado-${VERSION}-no-onto.sql.gz"
 echo "1" | make ontologies
 psql -h localhost -p 5432 -U postgres -c "UPDATE cvterm SET cv_id = 7 WHERE cv_id IN (SELECT cv_id FROM cv WHERE name='ro')"
 
@@ -45,16 +47,9 @@ echo "select * from fill_cvtermpath('cellular_component');" | psql -h localhost
 # Update links to external dbs
 psql -h localhost -p 5432 -U postgres < /opt/update_urls.sql
 
-pg_dump -h localhost -p 5432 -U postgres --no-owner --no-acl postgres > "/host/chado-${VERSION}.sql"
+pg_dump -h localhost -p 5432 -U postgres --no-owner --no-acl postgres | gzip > "/host/chado-${VERSION}.sql.gz"
 psql -h localhost -p 5432 -U postgres -c 'ALTER SCHEMA public RENAME TO chado'
-pg_dump -h localhost -p 5432 -U postgres --no-owner --no-acl postgres > "/host/chado-${VERSION}-tripal.sql"
-
-gzip < "/host/chado-${VERSION}-no-onto.sql" > "/host/chado-${VERSION}-no-onto.sql.gz"
-gzip < "/host/chado-${VERSION}.sql"         > "/host/chado-${VERSION}.sql.gz"
-gzip < "/host/chado-${VERSION}-tripal.sql"  > "/host/chado-${VERSION}-tripal.sql.gz"
-
-# Remove non-gzipped versions, zero value.
-rm /host/chado-${VERSION}*.sql
+pg_dump -h localhost -p 5432 -U postgres --no-owner --no-acl postgres | gzip > "/host/chado-${VERSION}-tripal.sql.gz"
 
 echo "The schema build has completed. The container will now intentionally crash"
 exit 42;