diff --git a/README.rst b/README.rst index 1be8ff90..81597b96 100644 --- a/README.rst +++ b/README.rst @@ -85,6 +85,8 @@ Or with the Arrow client: History ------- +- 4.2.10 + - Bugfix handling Shine-Dalgarno sequences (https://github.com/galaxy-genome-annotation/python-apollo/issues/48) - 4.2.9 - Bugfix to update_organism when using suppress_output - 4.2.8 diff --git a/apollo/util.py b/apollo/util.py index a29e9281..0c34cfba 100644 --- a/apollo/util.py +++ b/apollo/util.py @@ -15,7 +15,7 @@ noncoding_transcript_types = ['transcript', 'tRNA', 'snRNA', 'snoRNA', 'ncRNA', 'rRNA', 'mRNA', 'miRNA', 'guide_RNA', 'RNase_P_RNA', 'telomerase_RNA', 'SRP_RNA', 'lnc_RNA', 'RNase_MRP_RNA', 'scRNA', 'piRNA', 'tmRNA', 'enzymatic_RNA'] -single_level_feature_types = ["repeat_region", "terminator", "shine_dalgarno_sequence", "transposable_element"] +single_level_feature_types = ["repeat_region", "terminator", "transposable_element"] def WAAuth(parser): @@ -89,7 +89,7 @@ def AssertAdmin(user): def _tnType(feature): - if feature.type in ('gene', 'mRNA', 'exon', 'CDS', 'terminator', 'tRNA', 'snRNA', 'snoRNA', 'ncRNA', 'rRNA', 'miRNA', 'repeat_region', 'transposable_element', 'pseudogene', 'transcript'): + if feature.type in ('gene', 'mRNA', 'exon', 'CDS', 'terminator', 'tRNA', 'snRNA', 'snoRNA', 'ncRNA', 'rRNA', 'miRNA', 'repeat_region', 'transposable_element', 'pseudogene', 'transcript','Shine_Dalgarno_sequence'): return feature.type else: return 'exon' diff --git a/setup.py b/setup.py index c4e0f38b..807784a5 100644 --- a/setup.py +++ b/setup.py @@ -16,7 +16,7 @@ setup( name="apollo", - version='4.2.9', + version='4.2.10', description="Apollo API library", long_description=readme, author="Helena Rasche;Anthony Bretaudeau;Nathan Dunn",