updated for more memory and different target

galaxy-genome-annotation · Oct 29, 2019 · 7f1fbda · 7f1fbda
1 parent 6ff2319
commit 7f1fbda
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/bootstrap_apollo.sh b/bootstrap_apollo.sh
@@ -3,7 +3,7 @@
 export GALAXY_SHARED_DIR=`pwd`/apollo_shared_dir
 mkdir -p "$GALAXY_SHARED_DIR"
 
-docker run --memory=4g -d -it -p 8888:8080 -v `pwd`/apollo_shared_dir/:`pwd`/apollo_shared_dir/ quay.io/gmod/apollo:2.4.1
+docker run --memory=4g -d -it -p 8888:8080 -v `pwd`/apollo_shared_dir/:`pwd`/apollo_shared_dir/ quay.io/gmod/apollo:fix-2290-addOrganism-metadata
 
 echo "[BOOTSTRAP] Waiting while Apollo starts up..."
 # Wait for apollo to be online

diff --git a/test/remote_test.py b/test/remote_test.py
@@ -58,8 +58,8 @@ def test_add_organism(self):
         assert res['species'] == 'newspecies'
         assert res['genus'] == 'newgenus'
         # FIXME https://github.com/GMOD/Apollo/issues/2290
-        # meta_back = json.loads(res['metadata'])
-        # assert 'bla' in meta_back and meta_back['bla'] == 'bli'
+        meta_back = json.loads(res['metadata'])
+        assert 'bla' in meta_back and meta_back['bla'] == 'bli'
 
         time.sleep(3)
 
@@ -70,8 +70,8 @@ def test_add_organism(self):
         assert org_info['species'] == 'newspecies'
         assert org_info['genus'] == 'newgenus'
         # FIXME https://github.com/GMOD/Apollo/issues/2290
-        # meta_back = json.loads(org_info['metadata'])
-        # assert 'bla' in meta_back and meta_back['bla'] == 'bli'
+        meta_back = json.loads(org_info['metadata'])
+        assert 'bla' in meta_back and meta_back['bla'] == 'bli'
 
     def setUp(self):
         org_info = wa.organisms.show_organism('alt_org')