Multithreading option in GALA

[arslan9732]

Hi,
I am trying to use GALA in a single command on the cluster using the sun grid engine. But it is very slow due to the unavailability of multithreading in the GALA. Is there any way to speed up the job using multithreading.

Here is my script.

#!/bin/bash

#$ -N gala
#$ -cwd
#$ -l h_vmem=20G
#$ -o gala.log
#$ -e gala.error
### number of cores to be used
#$ -pe smp 26


#####   Actual script and data dir ########
WD=/mnt/data/

export PATH="/mnt/bin/hifiasm/hifiasm-0.16.1/:$PATH"
export PATH="/mnt/bin/canu/canu-2.2/bin/:$PATH"
export PATH="/mnt/bin/minimap2/minimap2-2.17_x64-linux/:/mnt/bin/samtools/samtools-1.9/:$PATH"
export PATH="/mnt/bin/bwa/bwa-0.7.17/:$PATH"
export PATH="/mnt/bin/flye/Flye-2.9.1/bin/:$PATH"

python2 /mnt/tool/GALA/gala draft_names_paths.txt fq raw pacbio-raw -f Final_combine -a canu flye hifiasm