Merge pull request #82 from annahoge/patch-1

Made cp recursive.
gavinha · Dec 19, 2019 · c4f94ee · c4f94ee
2 parents 97413f0 + 8173730
commit c4f94ee
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/snakemake/TitanCNA.snakefile b/scripts/snakemake/TitanCNA.snakefile
@@ -113,7 +113,7 @@ rule copyOptSolution:
 		for i in `cut -f11 {input} | grep -v "path"`;
 		do
 			echo -e "Copying $curDir/${{i}} to {output}"
-			cp ${{curDir}}/${{i}}* {output}
+			cp -r ${{curDir}}/${{i}}* {output}
 		done		
 		"""