diff --git a/scripts/snakemake/TitanCNA.snakefile b/scripts/snakemake/TitanCNA.snakefile index 1d037d7..8537afb 100644 --- a/scripts/snakemake/TitanCNA.snakefile +++ b/scripts/snakemake/TitanCNA.snakefile @@ -113,7 +113,7 @@ rule copyOptSolution: for i in `cut -f11 {input} | grep -v "path"`; do echo -e "Copying $curDir/${{i}} to {output}" - cp ${{curDir}}/${{i}}* {output} + cp -r ${{curDir}}/${{i}}* {output} done """