Skip to content

Issues: gavinha/TitanCNA

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

25 Open 57 Closed
25 Open 57 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

where to find ichorCNA.R and pysam version
#100 opened Jul 18, 2023 by ryao-mdanderson
environment configuration
#99 opened Jul 6, 2023 by FWYX
LogR and BAF
#98 opened Jun 7, 2023 by tanasa
TITAN for mm10
#96 opened Jan 31, 2022 by bhinderb
Decide on PR's/issues and create a release for dockerization?
#95 opened Jan 28, 2022 by vortexing
countPysam script returns 0 for all counts
#94 opened Sep 22, 2021 by thek71
Show segment be filtered by region width?
#92 opened Jun 18, 2021 by qindan2008
1
CNV estimation for WES data using TitanCNA
#90 opened Apr 26, 2021 by asaki1986
plotIdiogram issues - SNPchip R package installation fails
#88 opened Feb 9, 2021 by dsampath31
3
An issue related to chrX when running ichorCNA.snakefile thru TitanCNA
#86 opened Jun 26, 2020 by wenching
1
Corrected NEUT call, which seems to be a region of DLOH instead.
#85 opened Jun 10, 2020 by sahilseth
1
Snakemake workflow query
#80 opened Nov 4, 2019 by GeorgetteTanner
1
Non-human chromosome length
#77 opened Sep 4, 2019 by peterpdu
1
Ratios shifted upwards in CN segment plot
#75 opened Jul 25, 2019 by lbeltrame
5
Snakemake workflow makes Titan assume male gender regardless of how config.yaml file is configured. enhancement
#72 opened Apr 30, 2019 by d-henness
2
About Chromosome Y
#71 opened Apr 11, 2019 by guanghaoli
2
Cancer cell fraction
#70 opened Apr 5, 2019 by fpbarthel
2
Empty optimalClusterSolution.txt
#69 opened Mar 21, 2019 by d88020
4
Normal_contamination_estimate
#64 opened Jan 30, 2019 by udp3f
11
Optimize parameters to reduce overestimation of genome doubling enhancement
#61 opened Dec 19, 2018 by gavinha
@gavinha
1
Titan reporting very short CNVs
#60 opened Dec 17, 2018 by d-henness
1
selectSolution not selecting the best solution
#46 opened Nov 20, 2018 by fpbarthel
11
Using GATK CNV with TITAN
#38 opened Oct 23, 2018 by fpbarthel
14
Provide a list of TitanCall abbreviations in an easily-accessible form
#8 opened Sep 5, 2017 by lbeltrame
9
correctReadDepth requires S4Vectors but it is not imported
#6 opened Sep 4, 2017 by lbeltrame
ProTip! What’s not been updated in a month: updated:<2024-11-26.