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Assignments
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Note: all Assignments are due at the beginning of class unless noted otherwise

  • [Docker Installation and Practice]({{ site.baseurl }}/data/hw/DockerSetup.pdf) (required for Lab #1)
  • [Lab #1: Navigating Linux]({{ site.baseurl }}/data/hw/Linux.pdf) (Due: Wednesday, 1/30/2019)
  • [Lab #2: Files in Docker and HDFS]({{ site.baseurl }}/data/hw/HDFS-hw.pdf) (Due: Monday, 2/4/2019 Wednesday, 2/6/19)
    • [logs.zip]({{ site.baseurl }}/data/hw/logs.zip)
  • [Lab #3: Python]({{ site.baseurl }}/data/hw/lab3-python.py) (Due: Monday, 2/11/19)
  • [Lab #4: MapReduce]({{ site.baseurl }}/data/hw/MapReduce-hw.pdf) (Due: Wednesday, 2/20/19)
    • [lab4_help.py]({{ site.baseurl }}/data/hw/lab4_help.py)
    • [customers.zip]({{ site.baseurl }}/data/hw/customers.zip)
  • [Lab #5: MySQL]({{ site.baseurl }}/data/hw/MySQL.pdf) (Due: Wednesday, 3/06/19)
  • [Lab #6: Sqoop, Impala, and Hive]({{ site.baseurl }}/data/hw/sqoop.pdf) (Due: Wednesday, 3/20/19)
    • [more_salaries.txt]({{ site.baseurl }}/data/hw/more_salaries.txt)
  • [Lab #7: Data Modeling]({{ site.baseurl }}/data/hw/modeling.pdf) (Due: Monday, 3/25/19)
    • [la_parking_citations.zip]({{ site.baseurl }}/data/hw/la_parking_citations.zip)
  • [Lab #8: Functional Programming]({{ site.baseurl }}/data/hw/lab8.py) (Due: Monday, 4/8/19)
  • [Lab #9: PySpark]({{ site.baseurl }}/data/hw/lab9.py) (Due: Wednesday, 4/10/19)
    • [stream.txt]({{ site.baseurl }}/data/hw/stream.txt)
    • [example tweet]({{ site.baseurl }}/data/hw/tweet.json)
  • [Lab #10: Pair RDDs]({{ site.baseurl }}/data/hw/lab10.py) (Due: Wednesday, 4/17/19)
  • [Lab #11: SparkSQL]({{ site.baseurl }}/data/notes/SparkSQL.py) (Due: Monday, 5/6/19)
* Final Project ([Assignment]({{ site.baseurl }}/data/hw/FinalProject.pdf) | [Rubric]({{ site.baseurl }}/data/hw/FinalProjectRubric.pdf)) (Due: Friday, 5/17/19 by 1:00 PM, submit through [Blackboard](http://easternct.blackboard.com))

{% comment %}

  • Watch the You Tube videos covering genes, SNPs, and where your genes come from linked at the end of the Course Introduction notes
  • [Lab #2 - DNA and complements]({{ site.baseurl }}/data/hw/Lab2_Complements.pdf) (Due: Wednesday, 2/7)
  • [Lab #3 - Pathogen Identification (Python Lab)]({{ site.baseurl }}/data/hw/lab3.zip) (Due: Wednesday, 2/21)
  • [Lab #4 - Gene Expression]({{ site.baseurl }}/data/hw/GeneExpression.pdf) (Due: Wednesday, 2/21)
  • [Lab #5 - GenBank]({{ site.baseurl }}/data/hw/Lab5_GenBank.pdf) (Due: Monday, 3/05)
  • [Lab #6 - GenPept]({{ site.baseurl }}/data/hw/GenPept.pdf) (Due: Wednesday, 3/07)
  • [Lab #7 - Biopython]({{ site.baseurl }}/data/hw/Biopython_MAOA.py) (Due: Friday, 3/9)
  • [Cancer Biology Assignment]({{ site.baseurl }}/data/hw/GroupMethods.pdf) (Due: Wednesday, 3/28)
  • [Lab #8 - Pairwise Alignments]({{ site.baseurl }}/data/hw/PairwiseAlignment.pdf) (Due: Wednesday, 3/28)
  • [Lab #9 - Dynamic Programming]({{ site.baseurl }}/data/hw/DynamicProgramming.pdf) (Due: Monday, 4/2)
  • [Cancer Bio Project]({{ site.baseurl }}/data/hw/BioinformaticsGroupAssignment.pdf) (Due: Sunday, 4/8 at 5:00 PM; submit through Blackboard)
    • In addition, you must e-mail your Cancer Bio group with your final results, and CC me
  • [Lab #10 - BLAST]({{ site.baseurl }}/data/hw/Lab10_Blast.pdf) (Due: Wednesday, 4/11)
    • [sequences.txt]({{ site.baseurl }}/data/hw/sequences.txt)
  • Lab #11 - GEO ([Assignment]({{ site.baseurl }}/data/hw/GEO.docx) | [Preview]({{ site.baseurl }}/data/hw/GEO-preview.docx)) (Due: Wednesday, 4/11)
  • [Lab #12 - HMM]({{ site.baseurl }}/data/hw/HMM_lab.pdf) (Due: Wednesday, 5/02)
  • Final Project ([Assignment]({{ site.baseurl }}/data/hw/FinalProject.pdf) | [Rubric]({{ site.baseurl }}/data/hw/FinalProjectRubric.pdf))
    • Piazza Post Due Wednesday, 4/11
    • Project due: 5/9 by 4:00 PM
  • [Cancer Biology - Methods Assignment]({{ site.baseurl }}/data/hw/BioinformaticsGroupAssignment.pdf) (Due: Wednesday, 3/28; submit through Blackboard)
    • [c_elegans_orthologs.txt]({{ site.baseurl }}/data/hw/c_elegans_orthologs.txt)
  • [Cancer Biology Assignment (Individual Write-up)]({{ site.baseurl }}/data/hw/BioinformaticsIndividualAssignment.pdf) (Due: Monday, 4/24; submit through Blackboard)
* [Gene Prediction Test Sequences]({{ site.baseurl }}/data/hw/test_sequences.txt)

{% endcomment %}