-
Notifications
You must be signed in to change notification settings - Fork 22
/
codemeta.json
113 lines (113 loc) · 4.3 KB
/
codemeta.json
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
{
"@context": "https://w3id.org/codemeta/3.0",
"type": "SoftwareSourceCode",
"applicationCategory": "Bioinformatic",
"author": [
{
"id": "https://orcid.org/0000-0002-0220-0482",
"type": "Person",
"affiliation": {
"type": "Organization",
"name": "Bioinformatics and Biostatistics Hub, Institut Pasteur, Université de Paris Cité, 75015 Paris, France"
},
"email": "[email protected]",
"familyName": "Néron",
"givenName": "Bertrand"
},
{
"id": "_:author_2",
"type": "Person",
"affiliation": {
"type": "Organization",
"name": "Laboratoire Interdisciplinaire des Sciences du Numérique, Université Paris-Saclay, CNRS UMR 9015, INRIA, 91400 Orsay, France"
},
"email": "[email protected]",
"familyName": "Cury",
"givenName": "Jean"
},
{
"id": "https://orcid.org/0000-0001-7704-822X",
"type": "Person",
"affiliation": {
"type": "Organization",
"name": "Microbial Evolutionary Genomics, Institut Pasteur, Université de Paris Cité, CNRS UMR3525, 75015 Paris, France"
},
"email": "[email protected]",
"familyName": "Rocha",
"givenName": "Eduardo"
}
],
"codeRepository": "git+https://github.com/gem-pasteur/Integron_Finder",
"contributor": [
{
"id": "https://orcid.org/0000-0002-8793-9584",
"type": "Person",
"affiliation": {
"type": "Organization",
"name": "Microbial Evolutionary Genomics, Institut Pasteur, Université de Paris Cité, CNRS UMR3525, 75015 Paris, France / DGA CBRN Defence, 91710 Vert-le-Petit, France"
},
"email": "[email protected]",
"familyName": "Littner",
"givenName": "Eloi"
},
{
"id": "https://orcid.org/0000-0002-0878-2209",
"type": "Person",
"affiliation": {
"type": "Organization",
"name": "Microbial Evolutionary Genomics, Institut Pasteur, Université de Paris Cité, CNRS UMR3525, 75015 Paris, France / Ecole Doctorale FIRE–Programme Bettencourt, CRI, 75004 Paris, France"
},
"email": "[email protected]",
"familyName": "Haudiquet",
"givenName": "Matthieu"
},
{
"id": "https://orcid.org/0000-0003-4797-6185",
"type": "Person",
"affiliation": {
"type": "Organization",
"name": "Microbial Evolutionary Genomics, Institut Pasteur, Université de Paris Cité, CNRS UMR3525, 75015 Paris, France / Collège Doctoral, Sorbonne Université, 75005 Paris, France"
},
"email": "[email protected]",
"familyName": "Perrin",
"givenName": "Amandine"
}
],
"dateModified": "2024-06-05",
"description": "Integron_Finder is a program that detects integrons in DNA sequences.",
"downloadUrl": "https://pypi.org/project/integron-finder/",
"funder": {
"type": "Organization",
"name": "Institut Pasteur, CNRS"
},
"keywords": [
"integron",
"genomic",
"antibiotic resistance",
"bioinformatic"
],
"license": "https://spdx.org/licenses/GPL-3.0",
"name": "Integron_Finder",
"operatingSystem": [
"Linux",
"macOS"
],
"programmingLanguage": "Python 3",
"relatedLink": "https://integronfinder.readthedocs.io/en/v2.0.4/",
"softwareRequirements": [
"- Python >=3.10,<=3.12",
"- Pandas >=2",
"- Numpy >=1.26",
"- Biopython >=1.82,<=1.83",
"- Matplotlib >=3.8",
"- colorlog",
"- HMMER >=3.1b2,<=3.3.2",
"- INFERNAL >=1.1.2,<=1.1.4",
"- Prodigal >=2.6.2,<=V2.6.3"
],
"version": "2.0.5",
"developmentStatus": "active",
"funding": "ANR-16-CONV-0005, EQU201903007835, ANR-10-LABX-62-IBEID",
"issueTracker": "https://github.com/gem-pasteur/Integron_Finder/issues",
"referencePublication": "https://doi.org/10.3390/microorganisms10040700"
}