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setup.cfg
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setup.cfg
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# -*- coding: utf-8 -*-
####################################################################################
# Integron_Finder - Integron Finder aims at detecting integrons in DNA sequences #
# by finding particular features of the integron: #
# - the attC sites #
# - the integrase #
# - and when possible attI site and promoters. #
# #
# Authors: Jean Cury, Bertrand Neron, Eduardo PC Rocha #
# Copyright (c) 2015 - 2024 Institut Pasteur, Paris and CNRS. #
# See the COPYRIGHT file for details #
# #
# integron_finder is free software: you can redistribute it and/or modify #
# it under the terms of the GNU General Public License as published by #
# the Free Software Foundation, either version 3 of the License, or #
# (at your option) any later version. #
# #
# integron_finder is distributed in the hope that it will be useful, #
# but WITHOUT ANY WARRANTY; without even the implied warranty of #
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
# GNU General Public License for more details. #
# #
# You should have received a copy of the GNU General Public License #
# along with this program (COPYING file). #
# If not, see <http://www.gnu.org/licenses/>. #
####################################################################################
[metadata]
version= attr: integron_finder.__version__
name = integron_finder
author = Jean Cury
author_email = [email protected]
description = Integron Finder aims at detecting integrons in DNA sequences
long_description = file: README.md
long_description_content_type = text/markdown
home_page = https://github.com/gem-pasteur/Integron_Finder/
project_urls =
Bug Tracker = https://github.com/pypa/sampleproject/issues
Documentation = https://integronfinder.readthedocs.io/en/latest/
license = GPLv3
license_files = COPYING
classifiers =
Programming Language :: Python :: 3
Programming Language :: Python :: 3.10
Programming Language :: Python :: 3.11
Programming Language :: Python :: 3.12
License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Operating System :: POSIX
Intended Audience :: Science/Research
Topic :: Scientific/Engineering :: Bio-Informatics
[options]
python_requires = >=3.10
install_requires =
numpy >= 1.26
matplotlib >= 3.8
pandas >= 2
biopython >= 1.82
colorlog
packages = find:
[options.packages.find]
exclude =
build
tests
[options.extras_require]
dev =
sphinx
sphinx_rtd_theme
coverage
build
[options.entry_points]
console_scripts =
integron_finder=integron_finder.scripts.finder:main
integron_split=integron_finder.scripts.split:main
integron_merge=integron_finder.scripts.merge:main
[sdist]
formats = gztar
[coverage:run]
source = integron_finder
omit =
tests/*
setup.py
branch = True
# to exclude some lines and/or functions from coverage, add a comment
# '# pragma: no cover' in the line to exclude from coverage report
# (or first line of a function, loop etc. to exclude all function/loop)
[coverage:html]
directory = coverage_html
# run tests: coverage run tests/run_tests.py
# coverage html