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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["setuptools"]
build-backend = "setuptools.build_meta"
[project]
dynamic = ["version"]
name = "MacSyFinder"
authors = [
{name="Sophie Abby", email='[email protected]'},
{name="Bertrand Neron", email='[email protected]'}
]
maintainers = [
{name="Bertrand Neron", email='[email protected]'}
]
description = 'MacSyFinder: Detection of macromolecular systems in protein datasets using systems modelling and similarity search'
readme = "README.md"
license = {file="COPYING"}
classifiers = [
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3.13",
"License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
"Operating System :: POSIX",
"Environment :: Console",
"Development Status :: 5 - Production/Stable",
"Intended Audience :: Science/Research",
"Topic :: Scientific/Engineering :: Bio-Informatics"
]
requires-python = ">=3.10"
dependencies = [
"colorlog>=4.0.2",
"PyYAML>=5.1.1",
"packaging>=18.0",
"networkx>=2.4",
"pandas>=1.03",
"colorama>=0.4.4",
"certifi",
]
[project.optional-dependencies]
dev = [
"sphinx",
"sphinx_rtd_theme",
"sphinx-autodoc-typehints",
"sphinxcontrib-svg2pdfconverter",
"coverage[toml]",
"build",
"ruff",
"GitPython",
"pre-commit",
]
model = [
"GitPython"
]
[project.scripts]
macsyfinder = "macsypy.scripts.macsyfinder:main"
macsydata = "macsypy.scripts.macsydata:main"
macsyprofile = "macsypy.scripts.macsyprofile:main"
macsyconfig = "macsypy.scripts.macsyconfig:main"
macsysplit = "macsypy.scripts.macsy_gembase_split:main"
macsymerge = "macsypy.scripts.macsy_merge_results:main"
[project.urls]
Homepage = "https://github.com/gem-pasteur/macsyfinder/"
Documentation = "https://macsyfinder.readthedocs.io/en/latest/"
Repository = "https://github.com/gem-pasteur/macsyfinder/"
Issues = "https://github.com/gem-pasteur/macsyfinder/issues"
Changelog = "https://macsyfinder.readthedocs.io/en/latest/user_guide/new_v2.html#what-s-new-in-macsyfinder-v2"
[tool.setuptools.packages.find]
include = ["macsypy*"]
namespaces = false
[tool.setuptools.dynamic]
version = {attr = "macsypy.__version__"}
[tool.coverage.run]
branch = true
source = ["macsypy"]
command_line = "-m unittest discover -vv"
[tool.ruff]
target-version = "py310"
# Exclude a variety of commonly ignored directories.
exclude = [
".eggs",
".git",
".ipynb_checkpoints",
".pyenv",
".pytest_cache",
".pytype",
".ruff_cache",
".venv",
"__pypackages__",
"_build",
"build",
"dist",
"site-packages",
"venv",
]
# Same as Black.
line-length = 120
indent-width = 4
src = ['macsypy', 'tests', 'pyproject.toml']
[tool.ruff.format]
indent-style = "space"
[tool.ruff.lint.per-file-ignores]
#F841 Local variable `xxx` is assigned to but never used
"tests/test_System.py" = ["F841"]