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Feature request: ability to exclude IEAs when doing enrichment #2

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mcourtot opened this issue Nov 21, 2016 · 2 comments
Open

Feature request: ability to exclude IEAs when doing enrichment #2

mcourtot opened this issue Nov 21, 2016 · 2 comments
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@mcourtot
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From Yoko Yamada on the GO helpdesk, http://jira.geneontology.org/browse/GO-1405
[The user was trying to do an enrichment excluding IEAs and the option did not work anymore]

User said "It is unfortunate that the option is no longer available. I saw some GO classes are dominated by genes with IEA annotations having rather a small number of genes with experimental evidences and was interested to see how enrichment is affected by excluding IEAs."

cc @ValWood, @cmungall

@thomaspd
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@huaiyumi and @mugitty will look at what would need to be done to support filtering by evidence codes.

@huaiyumi
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PANTHER will put this on the todo list for the next release.

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