1.0.9

What's Changed

• Add docker-build action to take advantage of caching and use sharding by @lukfor in #105
• Add Step 1 logs by @krferrier and @seppinho in #109

Full Changelog: v1.0.8...v1.0.9

1.0.8

• rsID file is not required by default.

1.0.7

• Install awscli tool

1.0.6

• Install AWS CLI tools

1.0.5

What's Changed

• Update nf-test to v0.8.2 by @AmstlerStephan in #91
• Integration of VCF and BGEN for gene-based testing by @filosi in #92
• Update regenie version to 3.4 by @filosi in #93

New Contributors

• @AmstlerStephan made their first contribution in #91

Full Changelog: v1.0.4...v1.0.5

1.0.4

• Fix annotation process when downloading rsID files

1.0.3

What's Changed

• Update to latest regenie version by @seppinho in #88
• Feature/regenie optional params by @seppinho in #89

Full Changelog: v1.0.2...v1.0.3

1.0.2

What's Changed

• Create subworkflows by @seppinho in #86
• Add nf-validations by @seppinho in #87

Full Changelog: v1.0.1...v1.0.2

1.0.1

What's Changed

• Update nf-test and fix problem with filtering of N/A values by @seppinho in #85

Full Changelog: v1.0.0...v1.0.1

1.0.0

What's Changed

• Includes best-practices parallelization of REGENIE Step 1 by phenotype (LOCO predictions) by @lukfor and @seppinho
• Includes parallelization of REGENIE Step 2 (regression model) into genomic chunks by @seppinho and @lukfor. Chunk size and chunk strategy (variants / range) can be specified by users.
• Includes updated interactive Manhattan Plot to visualize millions of points by @lukfor and @johsr.
• Optimized parameter configuration to run on public clouds for hundreds of phenotypes by @seppinho in #84.
• Delete unused modules
• Parallelize gwas-report-index by @lukfor in #83
• Update to latest regenie version v3.2.9

Full Changelog: v0.7.7...v1.0.0