From 669805f7c2fcbe1f8da07b111fd607a9d5ca8d43 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Przemys=C5=82aw=20Biecek?= Date: Wed, 2 Aug 2017 22:27:11 +0200 Subject: [PATCH] porzadki --- .Rbuildignore | 3 +++ package/DESCRIPTION => DESCRIPTION | 0 package/NAMESPACE => NAMESPACE | 0 {package/R => R}/LUAD.R | 0 {package/R => R}/crSummary.R | 0 {package/R => R}/eventsTab.R | 0 {package/R => R}/fitAndTestCompRiskReg.R | 0 {package/R => R}/fitAndTestCox.R | 0 {package/R => R}/fitAndTestCuminc.R | 0 {package/R => R}/fitAndTestSurvival.R | 0 {package/R => R}/plotCuminc.R | 0 {package/R => R}/plotSurvival.R | 0 {package/R => R}/riskTab.R | 0 README.md | 4 ++-- package/cr17.Rproj => cr17.Rproj | 0 cr17_0.1.0.tar.gz | Bin 14364 -> 0 bytes {package/data => data}/LUAD.rda | Bin {package/man => man}/LUAD.Rd | 0 {package/man => man}/eventTab.Rd | 0 {package/man => man}/fitCuminc.Rd | 0 {package/man => man}/fitReg.Rd | 0 {package/man => man}/fitSurvival.Rd | 0 {package/man => man}/plotCuminc.Rd | 0 {package/man => man}/plotSurvival.Rd | 0 {package/man => man}/riskTab.Rd | 0 {package/man => man}/simpleCox.Rd | 0 {package/man => man}/summarizeCR.Rd | 0 {package/man => man}/testCox.Rd | 0 {package/man => man}/testCuminc.Rd | 0 {package/man => man}/testReg.Rd | 0 {package/man => man}/testSurvival.Rd | 0 getLUADdata.R => materials/getLUADdata.R | 0 package/.Rbuildignore | 2 -- 33 files changed, 5 insertions(+), 4 deletions(-) create mode 100644 .Rbuildignore rename package/DESCRIPTION => DESCRIPTION (100%) rename package/NAMESPACE => NAMESPACE (100%) rename {package/R => R}/LUAD.R (100%) rename {package/R => R}/crSummary.R (100%) rename {package/R => R}/eventsTab.R (100%) rename {package/R => R}/fitAndTestCompRiskReg.R (100%) rename {package/R => R}/fitAndTestCox.R (100%) rename {package/R => R}/fitAndTestCuminc.R (100%) rename {package/R => R}/fitAndTestSurvival.R (100%) rename {package/R => R}/plotCuminc.R (100%) rename {package/R => R}/plotSurvival.R (100%) rename {package/R => R}/riskTab.R (100%) rename package/cr17.Rproj => cr17.Rproj (100%) delete mode 100644 cr17_0.1.0.tar.gz rename {package/data => data}/LUAD.rda (100%) rename {package/man => man}/LUAD.Rd (100%) rename {package/man => man}/eventTab.Rd (100%) rename {package/man => man}/fitCuminc.Rd (100%) rename {package/man => man}/fitReg.Rd (100%) rename {package/man => man}/fitSurvival.Rd (100%) rename {package/man => man}/plotCuminc.Rd (100%) rename {package/man => man}/plotSurvival.Rd (100%) rename {package/man => man}/riskTab.Rd (100%) rename {package/man => man}/simpleCox.Rd (100%) rename {package/man => man}/summarizeCR.Rd (100%) rename {package/man => man}/testCox.Rd (100%) rename {package/man => man}/testCuminc.Rd (100%) rename {package/man => man}/testReg.Rd (100%) rename {package/man => man}/testSurvival.Rd (100%) rename getLUADdata.R => materials/getLUADdata.R (100%) delete mode 100644 package/.Rbuildignore diff --git a/.Rbuildignore b/.Rbuildignore new file mode 100644 index 0000000..466e8a8 --- /dev/null +++ b/.Rbuildignore @@ -0,0 +1,3 @@ +^.*\.Rproj$ +^.*\.Rproj$ +materials/* diff --git a/package/DESCRIPTION b/DESCRIPTION similarity index 100% rename from package/DESCRIPTION rename to DESCRIPTION diff --git a/package/NAMESPACE b/NAMESPACE similarity index 100% rename from package/NAMESPACE rename to NAMESPACE diff --git a/package/R/LUAD.R b/R/LUAD.R similarity index 100% rename from package/R/LUAD.R rename to R/LUAD.R diff --git a/package/R/crSummary.R b/R/crSummary.R similarity index 100% rename from package/R/crSummary.R rename to R/crSummary.R diff --git a/package/R/eventsTab.R b/R/eventsTab.R similarity index 100% rename from package/R/eventsTab.R rename to R/eventsTab.R diff --git a/package/R/fitAndTestCompRiskReg.R b/R/fitAndTestCompRiskReg.R similarity index 100% rename from package/R/fitAndTestCompRiskReg.R rename to R/fitAndTestCompRiskReg.R diff --git a/package/R/fitAndTestCox.R b/R/fitAndTestCox.R similarity index 100% rename from package/R/fitAndTestCox.R rename to R/fitAndTestCox.R diff --git a/package/R/fitAndTestCuminc.R b/R/fitAndTestCuminc.R similarity index 100% rename from package/R/fitAndTestCuminc.R rename to R/fitAndTestCuminc.R diff --git a/package/R/fitAndTestSurvival.R b/R/fitAndTestSurvival.R similarity index 100% rename from package/R/fitAndTestSurvival.R rename to R/fitAndTestSurvival.R diff --git a/package/R/plotCuminc.R b/R/plotCuminc.R similarity index 100% rename from package/R/plotCuminc.R rename to R/plotCuminc.R diff --git a/package/R/plotSurvival.R b/R/plotSurvival.R similarity index 100% rename from package/R/plotSurvival.R rename to R/plotSurvival.R diff --git a/package/R/riskTab.R b/R/riskTab.R similarity index 100% rename from package/R/riskTab.R rename to R/riskTab.R diff --git a/README.md b/README.md index f72724c..ca18a16 100644 --- a/README.md +++ b/README.md @@ -3,9 +3,9 @@ ## Installation ``` -devtools::install_github("geneticsMiNIng/cr17/package") +devtools::install_github("geneticsMiNIng/cr17") ``` ## Competing Risks with R and ggplot2 -* example data from RTCGA package [LUAD cancer](https://github.com/geneticsMiNIng/cr07/blob/master/getLUADdata.R) +* example data from RTCGA package [LUAD cancer](https://github.com/geneticsMiNIng/cr07/blob/master/materials/getLUADdata.R) diff --git a/package/cr17.Rproj b/cr17.Rproj similarity index 100% rename from package/cr17.Rproj rename to cr17.Rproj diff --git a/cr17_0.1.0.tar.gz b/cr17_0.1.0.tar.gz deleted file mode 100644 index 7810470df0fc495871750ad464e8d3a7fca31e45..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 14364 zcmV+%IOE43iwFP!000002JL+bcwAN4Fe;*kKOYnYK3w3Evdq9_GBerQw4s!A0qka4 z76~EV%-l>aow;|o_f9g?n8H^<bNRB4;EGlB?83mO{ zhU(?IQW5&e+4<34oLQ=`I;-DAU5P!RpR*J* zX{b31ufZv%V$}B;s-mSbMak0jjMS$aXc6U1aT%;_(q3f)uW}Zza#UKkpcRxH{ajX{S=IfE93BsJl>(4t)(%A_s1H={UR zlEMj;S6kDm7m8^`TcBHL0a~I6mTPMkC`!tNW1(hbvb~yKTSL!Os!dA7;;r?u*7|s> 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rename from getLUADdata.R rename to materials/getLUADdata.R diff --git a/package/.Rbuildignore b/package/.Rbuildignore deleted file mode 100644 index 91114bf..0000000 --- a/package/.Rbuildignore +++ /dev/null @@ -1,2 +0,0 @@ -^.*\.Rproj$ -^\.Rproj\.user$