diff --git a/Dockerfile b/Dockerfile index 2596e88..bd209d4 100644 --- a/Dockerfile +++ b/Dockerfile @@ -163,6 +163,16 @@ RUN export DEBIAN_FRONTEND=noninteractive && \ rm -r hisat2-$HISAT_VERSION/example && \ echo "PATH=\$PATH:~/hisat2-$HISAT_VERSION" >> ~/.bash_profile && \ + echo "Installing sra-toolkit..." && \ + SRA_TOOLKIT_VERSION=2.8.0 && \ + SRA_TOOLKIT_SHA1SUM=fcfcacde92e0d4633ea9ba23fec5945f31a32c39 && \ + wget -q ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/$SRA_TOOLKIT_VERSION/sratoolkit.$SRA_TOOLKIT_VERSION-ubuntu64.tar.gz -O sra_toolkit.tar.gz && \ + echo "$SRA_TOOLKIT_SHA1SUM *sra_toolkit.tar.gz" | sha1sum -c - && \ + mkdir sra_toolkit-$SRA_TOOLKIT_VERSION && \ + tar -xf sra_toolkit.tar.gz --directory sra_toolkit-$SRA_TOOLKIT_VERSION --strip-components=1 && \ + rm sra_toolkit.tar.gz && \ + echo "PATH=\$PATH:~/sra_toolkit-$SRA_TOOLKIT_VERSION/bin" >> ~/.bash_profile && \ + echo "Installing R packages..." && \ sudo Rscript --slave --no-save --no-restore-history -e " \ package_list = c( \