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Merge pull request #53 from jasonwalker80/master
Update JSON inputs and attribute names.
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,13 +1,17 @@ | ||
| { | ||
| "WholeGenomeSingleSampleQc.input_bam": "gs://genomics-public-data/platinum-genomes/bam/NA12878_S1.bam", | ||
| "WholeGenomeSingleSampleQc.input_bam_index": "gs://genomics-public-data/platinum-genomes/bam/NA12878_S1.bam.bai", | ||
| "WholeGenomeSingleSampleQc.base_name": "NA12878", | ||
| "WholeGenomeSingleSampleQc.contamination_sites_ud": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.contam.UD", | ||
| "WholeGenomeSingleSampleQc.contamination_sites_bed": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.contam.bed", | ||
| "WholeGenomeSingleSampleQc.contamination_sites_mu": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.contam.mu", | ||
| "WholeGenomeSingleSampleQc.ref_dict": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.dict", | ||
| "WholeGenomeSingleSampleQc.ref_fasta": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta", | ||
| "WholeGenomeSingleSampleQc.ref_fasta_index": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta.fai", | ||
| "WholeGenomeSingleSampleQc.wgs_coverage_interval_list": "gs://gcp-public-data--broad-references/hg38/v0/wgs_coverage_regions.hg38.interval_list", | ||
| "WholeGenomeSingleSampleQc.preemptible_tries": 3 | ||
| "SingleSampleQc.input_bam": "gs://genomics-public-data/platinum-genomes/bam/NA12878_S1.bam", | ||
| "SingleSampleQc.input_bam_index": "gs://genomics-public-data/platinum-genomes/bam/NA12878_S1.bam.bai", | ||
| "SingleSampleQc.base_name": "NA12878", | ||
| "SingleSampleQc.contamination_sites_ud": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.contam.UD", | ||
| "SingleSampleQc.contamination_sites_bed": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.contam.bed", | ||
| "SingleSampleQc.contamination_sites_mu": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.contam.mu", | ||
| "SingleSampleQc.ref_cache": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.ref_cache.tar.gz", | ||
| "SingleSampleQc.ref_dict": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.dict", | ||
| "SingleSampleQc.ref_fasta": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta", | ||
| "SingleSampleQc.ref_fasta_index": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta.fai", | ||
| "SingleSampleQc.coverage_interval_list": "gs://gcp-public-data--broad-references/hg38/v0/wgs_coverage_regions.hg38.interval_list", | ||
| "SingleSampleQc.preemptible_tries": 3, | ||
| "SingleSampleQc.is_wgs": "true", | ||
| "SingleSampleQC.CollectRawWgsMetrics.memory_multiplier": 4, | ||
| "SingleSampleQC.CollectHsMetrics.memory_multiplier": 2 | ||
| } |