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<!doctype html>
<html>
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="chrome=1">
<title>Genomearchitect.GitHub.io by genomearchitect</title>
<link rel="stylesheet" href="stylesheets/styles.css">
<link rel="stylesheet" href="stylesheets/github-dark.css">
<script src="javascripts/scale.fix.js"></script>
<meta name="viewport" content="width=device-width, initial-scale=1, user-scalable=no">
<!--[if lt IE 9]>
<script src="//html5shiv.googlecode.com/svn/trunk/html5.js"></script>
<![endif]-->
</head>
<body>
<div class="wrapper">
<header class="without-description">
<h1>Genomearchitect.GitHub.io</h1>
<p></p>
<p class="view"><a href="https://github.com/genomearchitect">View the Project on GitHub <small>genomearchitect</small></a></p>
<ul>
<li class="single"><a href="https://github.com/genomearchitect/genomearchitect.github.io">View On <strong>GitHub</strong></a></li>
</ul>
</header>
<section>
<h1>
<a id="apollo" class="anchor" href="#apollo" aria-hidden="true"><span aria-hidden="true" class="octicon octicon-link"></span></a>Apollo</h1>
<h3>
<a id="first-instantaneous-collaborative-genomic-annotation-editor-available-on-the-web" class="anchor" href="#first-instantaneous-collaborative-genomic-annotation-editor-available-on-the-web" aria-hidden="true"><span aria-hidden="true" class="octicon octicon-link"></span></a>First instantaneous, collaborative genomic annotation editor available on the Web.</h3>
<p>Apollo is designed to support geographically dispersed researchers, and the work of a distributed community is coordinated through automatic synchronization: all edits in one client are instantly pushed to all other clients, allowing users to see annotation updates from collaborators in real-time during the editing process.</p>
<p>There are no installation requirements for Annotators!</p>
<p>Apollo is a plug-in for JBrowse, adding User-created Annotations and DNA tracks to the familiar main window.</p>
<p>Try Apollo at our Public Demo, built with the genome of several organism including the honey bee (Apis mellifera).</p>
<h3>
<a id="highlighted-features" class="anchor" href="#highlighted-features" aria-hidden="true"><span aria-hidden="true" class="octicon octicon-link"></span></a>Highlighted features</h3>
<ul>
<li>In addition to genes and pseudogenes, users can annotate ncRNAs (snRNA, snoRNA, tRNA, rRNA), miRNAs, repeat regions, and transposable elements; each annotation type has its own configuration of the ' Information Editor'.</li>
<li>History tracking with undo/redo functions is available.</li>
<li>Users are able to directly set an annotation to a specific state, choosing from the 'History' display.</li>
<li>Adding and updating PubMed IDs will prompt users with a publication title to confirm their submission.</li>
<li>Gene Ontology (GO) terms are supported and GO ID auto-completion has been incorporated.</li>
<li>Users may access a 'Recent Changes' page.</li>
<li>Help page with Apollo specific content is available.</li>
</ul>
<h3>
<a id="downloads" class="anchor" href="#downloads" aria-hidden="true"><span aria-hidden="true" class="octicon octicon-link"></span></a>Downloads</h3>
<ul>
<li><a href="https://github.com/GMOD/Apollo/latest">Download Apollo</a></li>
<li><a href="https://github.com/GMOD/Apollo">Our code on Github</a></li>
</ul>
<h3>
<a id="documentation" class="anchor" href="#documentation" aria-hidden="true"><span aria-hidden="true" class="octicon octicon-link"></span></a>Documentation</h3>
<ul>
<li>Roadmap in github milestones</li>
<li>User guides, instructions on Apollo Web API, and Tutorial at GMOD Summer School</li>
<li>Installation and configuration guide</li>
<li><a href="https://github.com/GMOD/Apollo/issues">Report issues on Github</a></li>
<li>Questions can be sent to our Apollo user mailing list. You can subscribe by sending this email or fill out this form to subscribe to the list or use a sympa command sent to <a href="mailto:[email protected]">[email protected]</a>.</li>
<li>Alternative gmane interface for the Apollo mailing list for posting and searching archives.</li>
</ul>
<h3>
<a id="collaborations" class="anchor" href="#collaborations" aria-hidden="true"><span aria-hidden="true" class="octicon octicon-link"></span></a>Collaborations</h3>
<ul>
<li>The JBrowse Genome Browser</li>
<li>The Generic Model Organism Database (GMOD)</li>
</ul>
</section>
</div>
<footer>
<p>Hosted on GitHub Pages — Theme by <a href="https://github.com/orderedlist">orderedlist</a></p>
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