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Issues list

Restrict characters in samplesheet Effort S Effort Small enhancement New feature or request Gain L Gain Large Urgency M Urgency Medium
#504 opened Nov 19, 2024 by fellen31 0.5
Finer-grained control over analysis regions enhancement New feature or request
#503 opened Nov 14, 2024 by fellen31
Check for mismatches in columns when multiple files per sample are used Effort M Effort Medium enhancement New feature or request Gain L Gain Large Urgency M Urgency Medium
#500 opened Nov 12, 2024 by fellen31
Genmod annotate chromosome names missmatch for mitochondrial variants bug Something isn't working
#499 opened Nov 12, 2024 by fellen31
Warn about restrictive PacBio License enhancement New feature or request
#497 opened Nov 8, 2024 by Schmytzi
1
Add skip for SV calling enhancement New feature or request
#495 opened Nov 7, 2024 by fellen31
Echtvar databases should not be required for SNV annotation enhancement New feature or request
#494 opened Nov 7, 2024 by fellen31
Rank score penalty enhancement New feature or request needs refinement This issue needs refinement
#492 opened Nov 6, 2024 by fellen31
[User Story] Consistent naming of pipeline subworkflows Effort M Effort Medium Gain L Gain Large Urgency M Urgency Medium user story a user story describing new functionality
#483 opened Nov 4, 2024 by fellen31
1 of 9 tasks
0.5
Add chromograph Effort M Effort Medium Gain L Gain Large Urgency M Urgency Medium
#482 opened Nov 4, 2024 by fellen31 0.5
Add STRdust Effort M Effort Medium Gain L Gain Large Urgency L Urgency Large
#481 opened Nov 4, 2024 by fellen31
2 tasks
0.5
Replace multisample test data with NIST trio Effort M Effort Medium Gain L Gain Large Urgency M Urgency Medium
#478 opened Nov 1, 2024 by fellen31 0.5
Add test with multiple families per project Effort S Effort Small enhancement New feature or request Gain L Gain Large Urgency M Urgency Medium
#477 opened Nov 1, 2024 by fellen31 0.5
Add stub test for cadd_prescored and cadd resources with mock resources Effort S Effort Small Gain L Gain Large Urgency M Urgency Medium
#473 opened Nov 1, 2024 by fellen31 0.5
Add stub test for vep_chache with mock uncompressed cache Effort M Effort Medium Gain L Gain Large Urgency M Urgency Medium
#472 opened Nov 1, 2024 by fellen31 0.5
Implement nf-test for qc_aligned_reads Effort M Effort Medium Gain L Gain Large Urgency M Urgency Medium
#471 opened Nov 1, 2024 by fellen31
Implement nf-test for call_paralogs Effort M Effort Medium Gain L Gain Large Urgency M Urgency Medium
#470 opened Nov 1, 2024 by fellen31
Implement nf-test for assembly_variant_calling Effort M Effort Medium Gain L Gain Large Urgency M Urgency Medium
#469 opened Nov 1, 2024 by fellen31
Implement nf-test for genome_assembly Effort M Effort Medium Gain L Gain Large Urgency M Urgency Medium
#468 opened Nov 1, 2024 by fellen31
Implement nf-test for bam_infer_sex Effort M Effort Medium Gain L Gain Large Urgency M Urgency Medium
#467 opened Nov 1, 2024 by fellen31
Implement nf-test for convert_input_files Effort M Effort Medium Gain L Gain Large Urgency M Urgency Medium
#466 opened Nov 1, 2024 by fellen31
Implement nf-test for annotate_consequence_pli Effort M Effort Medium Gain L Gain Large Urgency M Urgency Medium
#465 opened Nov 1, 2024 by fellen31
Implement nf-test for prepare_genome Effort M Effort Medium Gain L Gain Large Urgency M Urgency Medium
#464 opened Nov 1, 2024 by fellen31
Implement nf-test for annotate_cadd Effort M Effort Medium Gain L Gain Large Urgency M Urgency Medium
#463 opened Nov 1, 2024 by fellen31
Add stub to SPLIT_BED_CHUNKS Effort S Effort Small Gain L Gain Large Urgency M Urgency Medium
#462 opened Nov 1, 2024 by fellen31 0.5
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