diff --git a/config/config.yaml b/config/config.yaml index b5ba9ec..537018c 100644 --- a/config/config.yaml +++ b/config/config.yaml @@ -110,6 +110,7 @@ merge_cnv_json: mosdepth_bed: container: "docker://hydragenetics/mosdepth:0.3.2" thresholds: "100,200,1000" + extra: " --mapq 20 " multiqc: container: "docker://hydragenetics/multiqc:1.21" @@ -202,7 +203,7 @@ vardict: bed_columns: "-c 1 -S 2 -E 3" vep: - container: docker://ensemblorg/ensembl-vep:release_110.1 + container: "docker://hydragenetics/vep:111.0" vep_cache: "" mode: "--offline --cache --merged " extra: " --assembly GRCh38 --check_existing --pick --variant_class --everything "