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feat: add pindel artifact annotation and filter #71

Merged
merged 18 commits into from
Jul 5, 2024
Merged

feat: add pindel artifact annotation and filter #71

merged 18 commits into from
Jul 5, 2024

Commits on May 27, 2024

  1. refactor: add pipeline version and restructure software versions

    @elleira
    elleira committed May 27, 2024
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Commits on Jun 5, 2024

  1. feat: hydra genetics 3.0.0 to include software versions into multiqc

    @elleira
    elleira committed Jun 5, 2024
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  2. refactor: remove missed comment on min_version()

    @elleira
    elleira authored Jun 5, 2024
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  3. style: make snakefmt happy

    @elleira
    elleira committed Jun 5, 2024
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  4. Merge branch 'main' into refactor_update_software_versions

    @elleira
    elleira authored Jun 5, 2024
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Commits on Jun 11, 2024

  1. feat: add background tsv file from refereces module

    @elleira
    elleira committed Jun 11, 2024
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Commits on Jun 25, 2024

  1. feat: add background annotation to snv_indels vcf-file

    @elleira
    elleira committed Jun 25, 2024
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Commits on Jun 26, 2024

  1. Merge branch 'main' into feat_background

    @elleira
    elleira authored Jun 26, 2024
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  2. test: add missing background in test config

    @elleira
    elleira committed Jun 26, 2024
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Commits on Jun 27, 2024

  1. chore: update cnv_sv module to include type in pindel vcf samplename

    @elleira
    elleira committed Jun 27, 2024
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  2. refactor: move all pindel processing rules into one snakefile

    @elleira
    elleira committed Jun 27, 2024
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  3. feat: create an artifact tsv-file in reference pipeline

    @elleira
    elleira committed Jun 27, 2024
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Commits on Jul 1, 2024

  1. fix: add samplename in dict, e.g. more than one del same pos

    @elleira
    elleira committed Jul 1, 2024
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  2. feat: add artifact annotation to pindel vcf

    @elleira
    elleira committed Jul 1, 2024
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Commits on Jul 4, 2024

  1. feat: add artifact filtering to pindel vcf

    @elleira
    elleira committed Jul 4, 2024
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  2. Merge branch 'main' into feat_pindel_artefact

    @elleira
    elleira authored Jul 4, 2024
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  3. fix: broken svdb-merge-vcf when using priority flag

    @elleira
    elleira committed Jul 4, 2024
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Commits on Jul 5, 2024

  1. Slight rewording and formatting

    @maehler
    maehler authored Jul 5, 2024
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