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Welcome to the SWC Bootcamp!

Introductions!

Introductory Talk

Using this website

Reload to get the latest links!

Here's a google doc we'll paste stuff into for quick notes: HHMI Notes

Agenda

We'll have breaks with snacks (at least it was promised!)

Day 1:

Shell Introduction (Adina)

Python Basics (Mike)

Python Advanced (Jordan)

Version Control (Jordan)

Day 2:

Advanced data analysis / Pandas (Mike)

Testing / Debugging (Jordan)

Automation (Jordan)

Summary / Survey (Adina)

Getting course materials

Git quick guide:

To get course materials downloaded for the first time, at the shell prompt:

git clone https://github.com/fishjord/swc_hhmi.git
cd swc_hhmi

To update the materials, do:

git pull origin master

Ipython Notebook quick quide:

To run:

ipython notebook --pylab=inline

Or:

c:\anaconda\scripts\ipython notebook --pylab=inline

To execute code:

shift-ENTER #execute current code cell and move to next
cntl-ENTER #execute current code and say in current cell

Check install:

  ~/swc_hhmi/check_setup/check_setup