diff --git a/paper.md b/paper.md index 67ca207..6dbe477 100644 --- a/paper.md +++ b/paper.md @@ -61,21 +61,16 @@ Julia syntax bear similarities with other widespread languages, for instance MAT ## Instructional design -The notebooks have been organised by subfolders according to their objectives: +The notebooks have been organised by sub-folders according to their objectives: 1. Introduction: brief introduction to the Julia language and to the Jupyter notebooks, how to deal with netCDF files (reading and writing) and how to generate figures (maps, sections, ...). 2. Preprocessing: preparation of the input required by `DIVAnd` (grid, time periods, bathymetry, observations) and estimation of the main analysis parameters (correlation length and noise-to-signal ratio). Code fragments dealing with various file formats (CSV, netCDF, TIFF, ...) are also provided to help users work with the most frequent types of data. 3. Analysis: creating of gridded fields with DIVAnd, influence of the analysis parameters, and interpolation with different coordinate systems. 4. Advanced topics: this folder contains less frequently used notebooks, dealing with the generation of density maps, relative correlation length, background fields, advection constraints. 5. Under development: notebooks that need additional testing and documentation, but can be useful for certain users. Those notebooks, once fulled checked, will be moved to the "Advanced topics" folder. -Since the notebooks require input data files (mainly bathymetry and observations) to be executed, we +Since the notebooks require input data files (mainly bathymetry and observations) to be executed, we ensure those files are available from an OwnCloud instance and downloaded locally whenever necessary. - - - -For learning modules, describe the learning objectives, content, instructional design, and experience of use in teaching and learning situations. -- Tell us the “story” of the project: how did it come to be? -- Cite key references, including a link to the open archive of the sofware or the learning module. +For the plotting tasks, the notebooks were recently rewritten to use the Makie module (along with CairoMakie and GeoMakie for the maps) # Figures