NAMESPACE

# Generated by roxygen2: do not edit by hand

export("drugs<-")
export(addGESSannot)
export(addMOA)
export(add_pcid)
export(append2H5)
export(build_custom_db)
export(cellNtestPlot)
export(comp_fea_res)
export(create_empty_h5)
export(drug_cell_ranks)
export(drugs)
export(dsea_GSEA)
export(dsea_hyperG)
export(dtnetplot)
export(enrichGO2)
export(enrichKEGG2)
export(enrichMOA)
export(enrichReactome)
export(feaResult)
export(gctx2h5)
export(gessResult)
export(gess_cmap)
export(gess_cor)
export(gess_fisher)
export(gess_gcmap)
export(gess_lincs)
export(gess_res_vis)
export(getDEGSig)
export(getSPsubSig)
export(getSig)
export(getTreats)
export(get_targets)
export(gmt2h5)
export(gseGO2)
export(gseKEGG2)
export(gseReactome)
export(list2df)
export(list_rev)
export(mabsGO)
export(mabsKEGG)
export(mabsReactome)
export(matrix2h5)
export(meanExpr2h5)
export(moa_conn)
export(parse_gctx)
export(qSig)
export(rand_query_ES)
export(read_gmt)
export(result)
export(runWF)
export(set_readable)
export(sim_score_grp)
export(tarReduce)
export(tsea_dup_hyperG)
export(tsea_mGSEA)
export(tsea_mabs)
export(vec_char_redu)
exportClasses(feaResult)
exportClasses(gessResult)
exportClasses(qSig)
exportMethods(dim)
exportMethods(head)
exportMethods(show)
exportMethods(tail)
import(AnnotationHub)
import(BiocParallel)
import(ExperimentHub)
import(HDF5Array)
import(Rcpp)
import(SummarizedExperiment)
import(data.table)
import(ggplot2)
import(methods)
import(org.Hs.eg.db)
import(rhdf5)
import(visNetwork)
importClassesFrom(methods,data.frame)
importFrom(AnnotationDbi,columns)
importFrom(AnnotationDbi,keys)
importFrom(AnnotationDbi,keytypes)
importFrom(AnnotationDbi,select)
importFrom(AnnotationDbi,toTable)
importFrom(BiocGenerics,fileName)
importFrom(DOSE,theme_dose)
importFrom(DelayedArray,colAutoGrid)
importFrom(DelayedArray,read_block)
importFrom(GSEABase,EntrezIdentifier)
importFrom(HDF5Array,HDF5Array)
importFrom(Matrix,colSums)
importFrom(Matrix,crossprod)
importFrom(Matrix,sparseMatrix)
importFrom(Matrix,t)
importFrom(RSQLite,SQLite)
importFrom(RSQLite,dbConnect)
importFrom(RSQLite,dbDisconnect)
importFrom(RSQLite,dbGetQuery)
importFrom(clusterProfiler,download_KEGG)
importFrom(data.table,":=")
importFrom(data.table,data.table)
importFrom(data.table,frank)
importFrom(data.table,rbindlist)
importFrom(dplyr,as_tibble)
importFrom(dplyr,bind_cols)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,relocate)
importFrom(dplyr,rename)
importFrom(dplyr,tibble)
importFrom(fastmatch,fmatch)
importFrom(fgsea,fgseaSimple)
importFrom(ggplot2,aes_)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,scale_colour_gradient)
importFrom(ggplot2,theme)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(qvalue,qvalue)
importFrom(reactome.db,reactomeEXTID2PATHID)
importFrom(reactome.db,reactomePATHID2EXTID)
importFrom(reactome.db,reactomePATHID2NAME)
importFrom(readr,read_tsv)
importFrom(readr,write_tsv)
importFrom(scales,cscale)
importFrom(scales,seq_gradient_pal)
importFrom(stats,dhyper)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,phyper)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,rnorm)
importFrom(stats,setNames)
importFrom(stringr,str_split)
importFrom(tibble,tibble)
importFrom(utils,data)
importFrom(utils,download.file)
importFrom(utils,globalVariables)
importFrom(utils,head)
importFrom(utils,read.delim)
importFrom(utils,str)
importFrom(utils,tail)
importFrom(utils,write.table)
importMethodsFrom(AnnotationDbi,as.list)
importMethodsFrom(AnnotationDbi,keys)
importMethodsFrom(AnnotationDbi,mappedkeys)
importMethodsFrom(AnnotationDbi,mget)
importMethodsFrom(GSEABase,GeneSet)
importMethodsFrom(GSEABase,GeneSetCollection)
importMethodsFrom(GSEABase,incidence)
useDynLib(signatureSearch)