Initial release of data sanitization service and Helm chart

.flake8

@@ -0,0 +1,3 @@
+[flake8]
+max-line-length = 88
+exclude = .git,__pycache__,__init__.py,.mypy_cache,.pytest_cache,.venv

.gitignore

@@ -0,0 +1,138 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/

.openapi-generator-ignore

@@ -0,0 +1,23 @@
+# OpenAPI Generator Ignore
+# Generated by openapi-generator https://github.com/openapitools/openapi-generator
+
+# Use this file to prevent files from being overwritten by the generator.
+# The patterns follow closely to .gitignore or .dockerignore.
+
+# As an example, the C# client generator defines ApiClient.cs.
+# You can make changes and tell OpenAPI Generator to ignore just this file by uncommenting the following line:
+#ApiClient.cs
+
+# You can match any string of characters against a directory, file or extension with a single asterisk (*):
+#foo/*/qux
+# The above matches foo/bar/qux and foo/baz/qux, but not foo/bar/baz/qux
+
+# You can recursively match patterns against a directory, file or extension with a double asterisk (**):
+#foo/**/qux
+# This matches foo/bar/qux, foo/baz/qux, and foo/bar/baz/qux
+
+# You can also negate patterns with an exclamation (!).
+# For example, you can ignore all files in a docs folder with the file extension .md:
+#docs/*.md
+# Then explicitly reverse the ignore rule for a single file:
+#!docs/README.md

.openapi-generator/FILES

@@ -0,0 +1,28 @@
+.flake8
+.gitignore
+.openapi-generator-ignore
+Dockerfile
+README.md
+docker-compose.yaml
+openapi.yaml
+pyproject.toml
+requirements.txt
+setup.cfg
+src/openapi_server/apis/__init__.py
+src/openapi_server/apis/job_api.py
+src/openapi_server/apis/job_api_base.py
+src/openapi_server/impl/__init__.py
+src/openapi_server/main.py
+src/openapi_server/models/__init__.py
+src/openapi_server/models/common_job.py
+src/openapi_server/models/common_job_executor.py
+src/openapi_server/models/extra_models.py
+src/openapi_server/models/job.py
+src/openapi_server/models/job_status.py
+src/openapi_server/models/k_anonymity_job.py
+src/openapi_server/models/l_diversity_job.py
+src/openapi_server/models/spark_pod_spec.py
+src/openapi_server/models/submit_job200_response.py
+src/openapi_server/security_api.py
+tests/conftest.py
+tests/test_job_api.py

.openapi-generator/VERSION

@@ -0,0 +1 @@
+7.4.0

Dockerfile

@@ -0,0 +1,34 @@
+FROM python:3.7 AS builder
+
+WORKDIR /usr/src/app
+
+RUN python3 -m venv /venv
+ENV PATH="/venv/bin:$PATH"
+
+RUN pip install --upgrade pip
+
+COPY . .
+RUN pip install --no-cache-dir .
+
+
+# FROM python:3.7 AS test_runner
+# WORKDIR /tmp
+# COPY --from=builder /venv /venv
+# COPY --from=builder /usr/src/app/templates templates
+# COPY --from=builder /usr/src/app/tests tests
+# ENV PATH=/venv/bin:$PATH
+
+# # install test dependencies
+# RUN pip install pytest
+
+# # run tests
+# RUN pytest tests
+
+
+FROM python:3.7 AS service
+WORKDIR /root/app/site-packages
+# COPY --from=test_runner /venv /venv
+# COPY --from=test_runner /tmp/templates templates
+COPY --from=builder /venv /venv
+COPY --from=builder /usr/src/app/templates templates
+ENV PATH=/venv/bin:$PATH