From 109bf61acedfce0eb36953d5a0f86a5f0005d40a Mon Sep 17 00:00:00 2001 From: parv-sachdeva Date: Tue, 27 Aug 2024 16:23:17 -0400 Subject: [PATCH 1/3] Fixes gladkia/igvShiny#88 --- inst/htmlwidgets/igvShiny.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/inst/htmlwidgets/igvShiny.js b/inst/htmlwidgets/igvShiny.js index 055df4e..f3bcab6 100644 --- a/inst/htmlwidgets/igvShiny.js +++ b/inst/htmlwidgets/igvShiny.js @@ -456,7 +456,7 @@ Shiny.addCustomMessageHandler("loadBedTrackFromFile", var igvBrowser = document.getElementById(elementID).igvBrowser; var trackName = message.trackName; var bedFile = message.bedFilepath; - var dataURL = window.location.href + bedFile; + var dataURL = window.location.href.split('?')[0] + bedFile; // If a query string is present the url before that is used igvshiny_log("dataURL: " + dataURL); var color = message.color; From c56c5d767b6e4843851c9efdb8327635cb99b75a Mon Sep 17 00:00:00 2001 From: parv-sachdeva Date: Thu, 29 Aug 2024 18:18:38 -0400 Subject: [PATCH 2/3] Update version to 1.0.5 for #88 --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 70ba140..8bd1a38 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: igvShiny Title: igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data) -Version: 1.0.4 +Version: 1.0.5 Date: 2024-08-25 Authors@R: c( person("Paul","Shannon", role = c("aut"), From 550e39a09331fb11474cb5a0fee56c4cbde8c25e Mon Sep 17 00:00:00 2001 From: parv-sachdeva Date: Thu, 29 Aug 2024 18:19:13 -0400 Subject: [PATCH 3/3] Update NEWS.md with notes for v1.0.5 - #88 --- NEWS.md | 3 +++ 1 file changed, 3 insertions(+) diff --git a/NEWS.md b/NEWS.md index 5156899..c16c105 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,6 @@ +## igvShiny 1.0.5 - 2024-08-29 +* fix issue with loading bed files when app is run with query strings + ## igvShiny 1.0.4 - 2024-08-25 * switch from Rcurl::url.exists to httr::http_error (Windows compatibility)