diff --git a/nextflow/simulation.nf b/nextflow/simulation.nf index 4c0b4e9..73d0dab 100644 --- a/nextflow/simulation.nf +++ b/nextflow/simulation.nf @@ -151,7 +151,7 @@ process generateLphyScripts { data { // Specify options for reading the date information from file options = {ageDirection="forward", ageRegex=".*_.*_(\d*\.\d+|\d+\.\d*)$"}; - D = readNexus(file="data/simulated.nex", options=options); + D = readNexus(file="!{seqs}", options=options); // Retrieve number of sites in alignment and taxa names L = D.nchar();