Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update simulations to a continuous phylogeographic process #6

Open
glstott opened this issue May 15, 2024 · 0 comments
Open

Update simulations to a continuous phylogeographic process #6

glstott opened this issue May 15, 2024 · 0 comments

Comments

@glstott
Copy link
Owner

glstott commented May 15, 2024

A continuous phylogeographic process is needed in order to demonstrate the utility of the tool in comparison to existing strategies.

Instead of using diversitree to simulate our true tree, it is better to simulate both the trees and the sequences using SLPHY, which would keep things within a similar framework and allow for additional helpful characteristics to be added into our simulations. There is insufficient time to do this refactor before June, but opening an issue to upgrade before preprint is submitted. https://linguaphylo.github.io/setup/

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant