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Basic Shiny App for users #8

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6 of 17 tasks
glstott opened this issue Aug 20, 2024 · 0 comments
Open
6 of 17 tasks

Basic Shiny App for users #8

glstott opened this issue Aug 20, 2024 · 0 comments

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@glstott
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glstott commented Aug 20, 2024

UI

  • Input files
  • Number of samples slider
  • Update slider for the size of file
  • Checkbox of distances to include
  • Select unique identifier
  • Select location data (if not lat/long)
  • Select categorical inclusion variables maybe?
  • Add in the host-search maybe?
  • Select number of reference sequences for pairwise distances
  • Input seed
  • Number of resamples (how many times you wanna sample?)

Backend

  • Modify PAST for the app (allow input of a dataframe OR integrate therein)
  • Include PAST
  • Include SRS
  • Include Stratified Random Sampling

Visualization and output

  • PCA plot with population and sample
  • Download button (should output CSV, fasta, and a text file describing selections)
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