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codon-usage-tables Public
Forked from Edinburgh-Genome-Foundry/codon-usage-tables📊 Codon usage tables in code-friendly format + Python bindings
Python Creative Commons Zero v1.0 Universal UpdatedDec 17, 2024 -
DnaChisel Public
Forked from Edinburgh-Genome-Foundry/DnaChisel✏️ A versatile DNA sequence optimizer
Python MIT License UpdatedAug 26, 2024 -
argparse_dataclass Public
Forked from mivade/argparse_dataclassDeclarative CLIs with argparse and dataclasses
Python MIT License UpdatedFeb 16, 2024 -
Unipressed Public
Forked from multimeric/UnipressedComprehensive Python client for the Uniprot REST API
Python MIT License UpdatedJun 5, 2023 -
pycoQC Public
Forked from a-slide/pycoQCpycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
Python GNU General Public License v3.0 UpdatedApr 26, 2023 -
pysam Public
Forked from pysam-developers/pysamPysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
C MIT License UpdatedApr 19, 2023 -
fastq_compression_comparison Public
Creating a simple Docker image to help perform comparisons for FASTQ compression
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cdna-display-proteolysis-pipeline Public
Forked from Rocklin-Lab/cdna-display-proteolysis-pipelineJupyter Notebook UpdatedJan 26, 2023 -
pre-commit Public
Forked from gruntwork-io/pre-commitA collection of pre-commit hooks used by Gruntwork tools
Shell Apache License 2.0 UpdatedMay 18, 2022 -
learning-jenkins-3003221 Public
Forked from LinkedInLearning/learning-jenkins-3003221Learning Jenkins
Other UpdatedMar 13, 2022 -
editdistance Public
Forked from roy-ht/editdistanceFast implementation of the edit distance(Levenshtein distance)
C++ MIT License UpdatedSep 20, 2021 -
cas-offinder Public
Forked from snugel/cas-offinderAn ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
C++ Other UpdatedFeb 23, 2021 -
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aws-elastic-beanstalk-cli Public
Forked from aws/aws-elastic-beanstalk-cliThe EB CLI is a command line interface for Elastic Beanstalk that provides interactive commands that simplify creating, updating and monitoring environments from a local repository.
Python Apache License 2.0 UpdatedJul 23, 2020 -
cpython Public
Forked from python/cpythonThe Python programming language
Python Other UpdatedJul 1, 2020 -
augur Public
Forked from nextstrain/augurPipeline components for real-time phylodynamic analysis
Python GNU Affero General Public License v3.0 UpdatedMar 15, 2020 -
parliament2 Public
Forked from dnanexus-archive/parliament2Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
Python Apache License 2.0 UpdatedNov 30, 2019 -
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viral-ngs Public
Forked from broadinstitute/viral-ngsViral genomics analysis pipelines
Python Other UpdatedAug 30, 2019 -
bwa-mem2 Public
Forked from bwa-mem2/bwa-mem2The next version of bwa-mem (WIP; not recommended for production uses at the moment)
C++ Other UpdatedMay 30, 2019 -
canu Public
Forked from marbl/canuA single molecule sequence assembler for genomes large and small.
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pybgen Public
Forked from lemieuxl/pybgenPython module to process BGEN files as dosage data
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Slurm4Azure Public
Forked from tamhinsf/Slurm4AzureDeploy Slurm Workload Manager on Ubuntu to Microsoft Azure
Shell UpdatedMar 23, 2018 -
sambamba Public
Forked from biod/sambambaTools for working with SAM/BAM data
D GNU General Public License v2.0 UpdatedAug 30, 2017 -
Bioinformatics library in D. (utils for working with SAM, BAM, SFF formats)
D MIT License UpdatedJul 25, 2017 -
hi-c-scaffold Public
Forked from marbl/SALSASALSA: A tool to scaffold long read assemblies with Hi-C data
Python UpdatedJun 9, 2017 -
Mash Public
Forked from marbl/MashFast genome and metagenome distance estimation using MinHash
C++ Other UpdatedApr 17, 2017