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Manage multiple annotation versions #46

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merged 41 commits into from
Oct 20, 2023
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9846c4f
Test add annotation name
mboudet Oct 5, 2023
112f75a
Merge branch 'dev_version' of github.com:mboudet/genenotebook into de…
mboudet Oct 5, 2023
977863e
Fix index maybe
mboudet Oct 5, 2023
5f50090
Test
mboudet Oct 5, 2023
f48daff
fix test
mboudet Oct 9, 2023
8beb9c6
Test UI
mboudet Oct 10, 2023
0becbda
Fix ui
mboudet Oct 10, 2023
efa2da0
Some more stuff
mboudet Oct 11, 2023
454a4a0
fixing ui
mboudet Oct 11, 2023
fcaeca9
Test check gene in pairwise parser
mboudet Oct 11, 2023
943565f
fix tests
mboudet Oct 11, 2023
16d10ad
add proper redirect to gene with annotation
mboudet Oct 11, 2023
b562bea
Fix interpro import + add warnings
mboudet Oct 11, 2023
65ad83e
Actually add annot in methods
mboudet Oct 12, 2023
322dc94
fix protein display
mboudet Oct 13, 2023
393eebe
Add some tests & change default attributes
mboudet Oct 13, 2023
d4c2a30
actually fix tests
mboudet Oct 13, 2023
947d12b
Index more stuff
mboudet Oct 13, 2023
6efabdb
Add annot name to UI
mboudet Oct 13, 2023
0c0b564
fixes
mboudet Oct 13, 2023
a461e52
Test gene selection
mboudet Oct 16, 2023
c82c2e8
fix ui
mboudet Oct 16, 2023
f32d427
Test annotation selector in UI
mboudet Oct 16, 2023
e3932ed
Merge branch 'dev_version' of github.com:mboudet/genenotebook into de…
mboudet Oct 16, 2023
3e3407e
ui
mboudet Oct 16, 2023
468afd2
Add annot to transcriptome
mboudet Oct 17, 2023
0e3b060
Fix tests
mboudet Oct 17, 2023
311557c
Fix
mboudet Oct 18, 2023
afb87dc
Merge branch 'dev_version' of github.com:mboudet/genenotebook into de…
mboudet Oct 18, 2023
7c18735
fix expression ui
mboudet Oct 18, 2023
16545e6
Add annotationName to experiment document to pre-filter in geneList
mboudet Oct 18, 2023
359a803
Merge branch 'dev_version' of github.com:mboudet/genenotebook into de…
mboudet Oct 18, 2023
47003c8
fix test & ui
mboudet Oct 18, 2023
395dc19
Add character to decode and decoding before annot funct
mboudet Oct 19, 2023
54cc6e2
Fix tests
mboudet Oct 19, 2023
36f0590
Orthogroups and changelog
mboudet Oct 19, 2023
e4a29e1
Merge branch 'dev_version' of github.com:mboudet/genenotebook into de…
mboudet Oct 19, 2023
a9c4235
fix test
mboudet Oct 20, 2023
cb8bf07
Fix UI
mboudet Oct 20, 2023
5dea2a5
Prepare release
mboudet Oct 20, 2023
cb046a2
update package-lock.json
mboudet Oct 20, 2023
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fixing ui
  • Loading branch information
mboudet committed Oct 11, 2023
commit 454a4a0e470d6327ebc5c2656ac4914a84be409b
1 change: 0 additions & 1 deletion imports/api/api.js
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,6 @@ import './genomes/removeGenome.js';
import './genomes/annotation/removeAnnotationTrack.js';
import './genomes/annotation/addAnnotation.js';

import './genes/interproscan.js';
import './genes/addInterproscan.js';
import './genes/eggnog/addEggnog.js';
import './genes/hectar/addHectar.js';
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2 changes: 2 additions & 0 deletions imports/api/genes/parseGff3Interproscan.js
Original file line number Diff line number Diff line change
Expand Up @@ -62,6 +62,8 @@ class ParseGff3File extends InterproscanProcessor {
geneQuery['annotationName'] = this.annot
}
let gene = Genes.findOne(geneQuery);
logger.log(gene)
logger.log(geneQuery)
if (typeof gene !== "undefined"){
this.currentGene = gene.ID
this.currentAnnotationName = gene.annotationName
Expand Down