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Cannot install vatools
with pip
#76
Comments
The error |
This is all the packages found in the conda environment: # packages in environment at /home/paifb01/mambaforge/envs/pvac:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
bzip2 1.0.8 hd590300_5 conda-forge
ca-certificates 2024.2.2 hbcca054_0 conda-forge
ld_impl_linux-64 2.40 h41732ed_0 conda-forge
libexpat 2.5.0 hcb278e6_1 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libgcc-ng 13.2.0 h807b86a_5 conda-forge
libgomp 13.2.0 h807b86a_5 conda-forge
libnsl 2.0.1 hd590300_0 conda-forge
libsqlite 3.45.1 h2797004_0 conda-forge
libuuid 2.38.1 h0b41bf4_0 conda-forge
libxcrypt 4.4.36 hd590300_1 conda-forge
libzlib 1.2.13 hd590300_5 conda-forge
ncurses 6.4 h59595ed_2 conda-forge
openssl 3.2.1 hd590300_0 conda-forge
pip 24.0 pyhd8ed1ab_0 conda-forge
python 3.12.1 hab00c5b_1_cpython conda-forge
readline 8.2 h8228510_1 conda-forge
setuptools 58.0.0 pypi_0 pypi
tk 8.6.13 noxft_h4845f30_101 conda-forge
tzdata 2024a h0c530f3_0 conda-forge
wheel 0.42.0 pyhd8ed1ab_0 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge So I have setuptools version 58 |
Update: When I set the Python version to 3.8 the installation works. |
I'm glad you were able to install VAtools on python 3.8. The setuptools version in your 3.12 container seems to be quite old. Can you try upgrading it and see if that changes the behavior? |
I actually downgraded it because the lates version did not work either and that was something that I encountered with other tools sometimes. |
I thought the installation failed because the version of the vcfpy package is too old. |
I created a new conda environment on my linux workstateion running Rocky Linux 9.3 (Blue Onyx) with python 3.12 and installed pip.
Running
pip install vatools
leads toAre there any hints on what I missied here? Installing other packages via pip works fine.
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