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Merge pull request #1148 from griffithlab/alleles
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Add new alleles that weren't previously supported
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susannasiebert authored Dec 11, 2024
2 parents 7850a13 + af02b52 commit b146b3a
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Showing 5 changed files with 87 additions and 0 deletions.
21 changes: 21 additions & 0 deletions pvactools/tools/pvacseq/iedb_alleles/class_i/netmhcpan.tsv
Original file line number Diff line number Diff line change
Expand Up @@ -25073,3 +25073,24 @@ cow BoLA-T7 11
cow BoLA-T7 12
cow BoLA-T7 13
cow BoLA-T7 14
dog DLA-8803401 8
dog DLA-8803401 9
dog DLA-8803401 10
dog DLA-8803401 11
dog DLA-8803401 12
dog DLA-8803401 13
dog DLA-8803401 14
dog DLA-8850101 8
dog DLA-8850101 9
dog DLA-8850101 10
dog DLA-8850101 11
dog DLA-8850101 12
dog DLA-8850101 13
dog DLA-8850101 14
dog DLA-8850801 8
dog DLA-8850801 9
dog DLA-8850801 10
dog DLA-8850801 11
dog DLA-8850801 12
dog DLA-8850801 13
dog DLA-8850801 14
21 changes: 21 additions & 0 deletions pvactools/tools/pvacseq/iedb_alleles/class_i/netmhcpan_el.tsv
Original file line number Diff line number Diff line change
Expand Up @@ -25073,3 +25073,24 @@ cow BoLA-T7 11
cow BoLA-T7 12
cow BoLA-T7 13
cow BoLA-T7 14
dog DLA-8803401 8
dog DLA-8803401 9
dog DLA-8803401 10
dog DLA-8803401 11
dog DLA-8803401 12
dog DLA-8803401 13
dog DLA-8803401 14
dog DLA-8850101 8
dog DLA-8850101 9
dog DLA-8850101 10
dog DLA-8850101 11
dog DLA-8850101 12
dog DLA-8850101 13
dog DLA-8850101 14
dog DLA-8850801 8
dog DLA-8850801 9
dog DLA-8850801 10
dog DLA-8850801 11
dog DLA-8850801 12
dog DLA-8850801 13
dog DLA-8850801 14
5 changes: 5 additions & 0 deletions pvactools/tools/pvacseq/iedb_alleles/class_ii/NetMHCIIpan.tsv
Original file line number Diff line number Diff line change
Expand Up @@ -5620,3 +5620,8 @@ DRB5*02:04
DRB5*02:05
H2-IAb
H2-IAd
H2-IAk
H2-IAs
H2-IAu
H2-IEd
H2-IEk
Original file line number Diff line number Diff line change
Expand Up @@ -5620,3 +5620,8 @@ DRB5*02:04
DRB5*02:05
H2-IAb
H2-IAd
H2-IAk
H2-IAs
H2-IAu
H2-IEd
H2-IEk
35 changes: 35 additions & 0 deletions pvactools/tools/pvacseq/iedb_alleles/class_ii/nn_align.tsv
Original file line number Diff line number Diff line change
@@ -1,27 +1,62 @@
DPA1*01-DPB1*04:01
DPA1*01:03-DPB1*02:01
DPA1*01:03-DPB1*03:01
DPA1*01:03-DPB1*04:01
DPA1*01:03-DPB1*04:02
DPA1*01:03-DPB1*06:01
DPA1*02:01-DPB1*01:01
DPA1*02:01-DPB1*05:01
DPA1*02:01-DPB1*14:01
DPA1*03:01-DPB1*04:02
DQA1*01:01-DQB1*05:01
DQA1*01:02-DQB1*05:01
DQA1*01:02-DQB1*05:02
DQA1*01:02-DQB1*06:02
DQA1*01:03-DQB1*06:03
DQA1*01:04-DQB1*05:03
DQA1*02:01-DQB1*02:02
DQA1*02:01-DQB1*03:01
DQA1*02:01-DQB1*03:03
DQA1*02:01-DQB1*04:02
DQA1*03:01-DQB1*03:01
DQA1*03:01-DQB1*03:02
DQA1*03:03-DQB1*04:02
DQA1*04:01-DQB1*04:02
DQA1*05:01-DQB1*02:01
DQA1*05:01-DQB1*03:01
DQA1*05:01-DQB1*03:02
DQA1*05:01-DQB1*03:03
DQA1*05:01-DQB1*04:02
DQA1*06:01-DQB1*04:02
DRB1*01:01
DRB1*01:03
DRB1*03:01
DRB1*04:01
DRB1*04:02
DRB1*04:03
DRB1*04:04
DRB1*04:05
DRB1*07:01
DRB1*08:01
DRB1*08:02
DRB1*09:01
DRB1*10:01
DRB1*11:01
DRB1*12:01
DRB1*13:01
DRB1*13:02
DRB1*15:01
DRB1*16:02
DRB3*01:01
DRB3*02:02
DRB3*03:01
DRB4*01:01
DRB4*01:03
DRB5*01:01
H2-IAb
H2-IAd
H2-IAk
H2-IAs
H2-IAu
H2-IEd
H2-IEk

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