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feat: added per-read anchor requirement to junction extract #195

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@TimD1 TimD1 commented Sep 19, 2024

 - closes griffithlab#176, CMake was including `src/utils/bedtools/gzstream/version`
   as a C++ source file, when it was a simple text file containing version info
 - I moved this version info into `src/utils/bedtools/gzstream/README`
 - fixes griffithlab#188, min_intron_length_ was accidentally set from min_anchor_len_
 - closes griffithlab#183, flag based filtering
 - closes griffithlab#189, mapping quality based filtering
 - option '-F' filters reads containing any of these flags
 - option '-f' filters reads not containing all these flags
 - option '-q' filters reads below this mapping quality
 - closes griffithlab#186, reads now only 'support' a junction if they have at least
   a given minimum anchor length, supplied with the '-A' flag (default 0)
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Feature request: add per-read anchor requirement to junction extract tool
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