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blast.template
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commandline = blastall -p ${program} -i ${inputquery} -d ${db} -e ${expectation_cutoff} -o output.txt ${other}
application = blast
applicationVersion = 2.2.21
force_single = true
hostCount = 1
memory = 1024m
walltimeInSeconds = 3600
= Start =
-
[Heading]
type = InfoField
size = 1000x140
defaultValue = BLAST - NCBI Basic Local Alignment Search Tool. Databases on ARCS sites are preformatted into 42 fragments for compatibility with mpiBLAST.
[Source]
type = InfoField
size = 1000x140
defaultValue = Source: http://blast.ncbi.nlm.nih.gov/Blast.cgi - Defaults: Single threaded, results stored in myout.txt
-
[jobname]
type = Jobname
defaultValue = blastjob
title = Jobname
size = 2000x70
-
[program]
type = TextCombo
title = Program
size = 150x70
prefills = blastp,blastn,blastx,tblastn,tblastx
editable = false
[db]
type = TextCombo
title = Database
size = 150x70
prefills = nr,nt
editable = false
useHistory = false
[expectation_cutoff]
type = TextCombo
title = Cutoff E
size = 150x70
prefills = 0.0001,0.001,0.01,0.1,1.0,10
editable = false
useHistory = true
[extendt]
type = TextCombo
title = Extend T
size = 150x70
prefills = 11
editable = false
useHistory = true
[other]
type = TextCombo
title = Other parameters
size = 2000x70
editable = true
useHistory = true
prefills = -m 6
-
[Tips]
type = InfoField
size = 2000x70
defaultValue = Tip: -m 6 will give results that are flat query-anchored, no identities and blunt ends. Requests for additional databases and for installation of newer versions should be made to [email protected]
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[inputquery]
type = SingleInputFile
size = 2000x70
title = Input FASTA file
filter = BasenameFilter
= About VPAC =
-
[vpacInfo1]
type = InfoField
title =
size = 2000x70
defaultValue = BLAST runs on resources provided by VPAC - The Victorian Partnership for Advanced Computing - Innovation powered by advanced computing
-
[vpacMembers]
type = InfoField
title = VPAC Members
size = 2000x280
defaultValue = Deakin University, La Trobe University, Monash University, RMIT, Swinburne University of Technology, University of Melbourne, University of Ballarat and Victoria University
= About eRSA =
-
[ersaInfo1]
type = InfoField
title =
size = 2000x70
defaultValue = BLAST runs on resources provided by eResearch SA - Advanced Technologies for Changing Research
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[ersaMembers]
type = InfoField
title = eRSA Members
size = 2000x280
defaultValue = University of Adelaide, Flinders University, and University of South Australia
= Registry =
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[registry1]
type = InfoField
title =
size = 2000x70
defaultValue = Known installations of BLAST in Australia
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[registry2]
type = InfoField
title =
size = 2000x140
defaultValue = If you wish to list your installation, please send details of the number of CPUs, RAM and Storage, plus some description of what you use BLAST for to [email protected]