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  1. metacoder metacoder Public

    Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

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  2. Population_Genetics_in_R Population_Genetics_in_R Public

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  3. poppr poppr Public

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  4. analysis_of_microbiome_community_data_in_r analysis_of_microbiome_community_data_in_r Public

    This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/

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  5. Reproducible-science-in-R Reproducible-science-in-R Public

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  • pathogensurveillance Public Forked from nf-core/pathogensurveillance

    Surveillance of pathogens using population genomics and sequencing

    grunwaldlab/pathogensurveillance’s past year of commit activity
    HTML 3 MIT 5 0 0 Updated Nov 21, 2024
  • psminer Public

    Work in progress. Backend for pathogensurveillance

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    R 2 1 9 0 Updated Nov 5, 2024
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    Documentation for the pathogensurveillance pipeline

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    A lightweight kmer-based algorithm for designing diagnostic CRISPR assays using genome data.

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    Python 10 3 21 1 Updated Aug 19, 2024
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  • OomyceteDB Public

    A new barcode for characterizing oomycete communities.

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  • poppr Public

    🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction

    grunwaldlab/poppr’s past year of commit activity
    R 68 26 17 0 Updated May 16, 2024
  • metacoder Public

    Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

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    R 136 28 144 0 Updated Feb 20, 2024
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    Record of exercises done to learn bioinformatics

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