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Missing two NCBI taxid in release 1 #22

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peterjc opened this issue Jul 7, 2022 · 0 comments
Open

Missing two NCBI taxid in release 1 #22

peterjc opened this issue Jul 7, 2022 · 0 comments

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@peterjc
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peterjc commented Jul 7, 2022

Two of the 885 entries in release 1, dated 2021-03-01, are missing an NCBI taxid:

$ grep "^>" oomycetedb_whole_2022_06_28_08_47_34.fa -c
885
$ grep "^>" oomycetedb_whole_2022_06_28_08_47_34.fa | grep "taxid=NA" -c -v
883
$ grep "^>" oomycetedb_whole_2022_06_28_08_47_34.fa | grep "taxid=NA" -c 
2
$ grep "^>" oomycetedb_whole_2022_06_28_08_47_34.fa | grep "taxid=NA"
>name=Pythium rhizoterrae|strain=CBS 146585|ncbi_acc=MW661036|ncbi_taxid=NA|oodb_id=744|taxonomy=cellular_organisms;Eukaryota;Stramenopiles;Oomycetes;Pythiales;Pythiaceae;Pythium rhizoterrae
>name=Pythium aquasilvae|strain=CBS 146586|ncbi_acc=MW661032|ncbi_taxid=NA|oodb_id=745|taxonomy=cellular_organisms;Eukaryota;Stramenopiles;Oomycetes;Pythiales;Pythiaceae;Pythium aquasilvae

These appear to be the following NCBI taxonomy entries:

Edit - fixed typo

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