psminer errors

[buchanri]

Hi! I'm running the pathogensurveillance pipeline and currently rendering the reports in R. However, I'm getting these errors for some of my reports from psminer. Any help in understanding the meaning of them would be appreciated.

processing file: index.qmd
  |...                                          |   6% [load_libraries]        Warning: program compiled against libxml 210 using older 209
  |.......................                      |  52% [ani_heatmap]           Error in `.rowNamesDF<-`:
! missing values in 'row.names' are not allowed
Backtrace:
 1. psminer::make_ani_heatmap(ani_matrix * 100, ref_data, sample_data)
 2. base::`rownames<-`(`*tmp*`, value = name_key[rownames(ani_matrix)])
 4. base::`row.names<-.data.frame`(`*tmp*`, value = value)
 5. base::`.rowNamesDF<-`(x, value = value)

Quitting from lines 273-274 [ani_heatmap] (index.qmd)
                                                                                                                   
Execution halted

and another one

processing file: index.qmd
  |...                                          |   6% [load_libraries]        Warning: program compiled against libxml 210 using older 209
  |......................                       |  49% [unnamed-chunk-9]       Error in `data.frame()`:
! arguments imply differing number of rows: 1, 0
Backtrace:
 1. psminer::print_ani_table(ani_matrix * 100, sample_data, ref_data)
 3. base::lapply(...)
 4. psminer (local) FUN(X[[i]], ...)
 5. base::data.frame(...)

Quitting from lines 258-259 [unnamed-chunk-9] (index.qmd)
                                                                                                                   
Execution halted

Here's also the paths to the report inputs /nfs7/BPP/Chang_Lab/paradarc/paper2_bra/results/nxf_061524/prepare_report_input. The ones that are causing these errors are the Bradyrhizobium_sp_CCH5-F6_inputs and Sinorhizobium_fredii_inputs (the first error), Sinorhizobium_kostiense_inputs(second error).
Thanks!