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But when it comes to use the biofiles::filter function I can't nake it work: biofiles::filter(gbk, Feature = "rRNA", product = "16S ribosomal RNA") -> rRNA
biofiles::summary(rRNA)
[[NZ_CAEUHN010000001]]
1857785 bp: Bacteroides fragilis isolate NZ_Bacteroides_fragilis_8E3_BL_hyb, whole genome shotgun sequence.
Error in if (is.atomic(x) || len == 1L && length(nm) <= 1L) { :
missing value where TRUE/FALSE needed
Dear biofiles developpers / users,
I am trying to extract 16S operon from a collection of genbank flat files using R.
I am able to load the file sucessfully:
But when it comes to use the biofiles::filter function I can't nake it work:
biofiles::filter(gbk, Feature = "rRNA", product = "16S ribosomal RNA") -> rRNA
biofiles::summary(rRNA)
biofiles::getSequence(rRNA)
The full contigs are exported.
Any idea where I am wrong?
Thanks a ton
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