diff --git a/README.Rmd b/README.Rmd index 8ad17b8..396c039 100644 --- a/README.Rmd +++ b/README.Rmd @@ -42,7 +42,9 @@ devtools::install_github("gtonkinhill/fastbaps", build_vignettes = TRUE) ## Quick Start -Run fastbaps +Run fastbaps. + +**NOTE:** You need to replace the variable `fasta.file.name` with the path to your fasta file. The system.file function is only used in this example vignette. ```{r, fig.width =8, fig.height=6, fig.align='center'} # devtools::install_github("gtonkinhill/fastbaps") diff --git a/README.md b/README.md index ddc337e..2ca495e 100644 --- a/README.md +++ b/README.md @@ -25,7 +25,9 @@ devtools::install_github("gtonkinhill/fastbaps", build_vignettes = TRUE) Quick Start ----------- -Run fastbaps +Run fastbaps. + +**NOTE:** You need to replace the variable `fasta.file.name` with the path to your fasta file. The system.file function is only used in this example vignette. ``` r # devtools::install_github('gtonkinhill/fastbaps') diff --git a/inst/vignette-supp/unnamed-chunk-12-1.png b/inst/vignette-supp/unnamed-chunk-12-1.png index abd2dfa..29e64fc 100644 Binary files a/inst/vignette-supp/unnamed-chunk-12-1.png and b/inst/vignette-supp/unnamed-chunk-12-1.png differ diff --git a/inst/vignette-supp/unnamed-chunk-13-1.png b/inst/vignette-supp/unnamed-chunk-13-1.png index 2239310..b38cd4d 100644 Binary files a/inst/vignette-supp/unnamed-chunk-13-1.png and b/inst/vignette-supp/unnamed-chunk-13-1.png differ diff --git a/inst/vignette-supp/unnamed-chunk-14-1.png b/inst/vignette-supp/unnamed-chunk-14-1.png index 1ff9e7c..cd4159c 100644 Binary files a/inst/vignette-supp/unnamed-chunk-14-1.png and b/inst/vignette-supp/unnamed-chunk-14-1.png differ diff --git a/inst/vignette-supp/unnamed-chunk-15-1.png b/inst/vignette-supp/unnamed-chunk-15-1.png index 04154bc..e07a615 100644 Binary files a/inst/vignette-supp/unnamed-chunk-15-1.png and b/inst/vignette-supp/unnamed-chunk-15-1.png differ diff --git a/inst/vignette-supp/unnamed-chunk-16-1.png b/inst/vignette-supp/unnamed-chunk-16-1.png index 68fe5a5..ccc7f64 100644 Binary files a/inst/vignette-supp/unnamed-chunk-16-1.png and b/inst/vignette-supp/unnamed-chunk-16-1.png differ diff --git a/inst/vignette-supp/unnamed-chunk-17-1.png b/inst/vignette-supp/unnamed-chunk-17-1.png index ee5a857..5183c8a 100644 Binary files a/inst/vignette-supp/unnamed-chunk-17-1.png and b/inst/vignette-supp/unnamed-chunk-17-1.png differ